miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;CAAP02002239.1/46319-46198 29760:Vitis vinifera
Length = 122
Score = 218 bits (110), Expect = 1e-56
Identities = 119/122 (97%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccggaatttatatatagtgagaagagaagagg 61
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 agagtggaatgcagccaagaatgatttgccggaatttatatatagtgagaagagaagagg 60
Query: 62 ctatatgctttcacatatatagtgaaccctggcaagttgtccttggctacatttgattct 121
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctataggctttcacatatatagtgaaccctggcaagttgtccttggctacatttgattct 120
Query: 122 ct 123
||
Sbjct: 121 ct 122
>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
Length = 120
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccggaatttatatatag 46
|||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1 agagtggagtgcagccaaggatgacttgccggaattcacatatag 45
>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
Length = 120
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccggaatttatatatag 46
|||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1 agagtggagtgcagccaaggatgacttgccggaattcacatatag 45
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccggaattt 38
||||| |||||||||||||||||||||||||| ||||
Sbjct: 1 agagtagaatgcagccaaggatgacttgccggcattt 37
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccggaattt 38
||||| |||||||||||||||||||||||||| ||||
Sbjct: 1 agagtcgaatgcagccaaggatgacttgccggcattt 37
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 3 gagtggaatgcagccaaggatgacttgccgga 34
|||| |||||||||||||||||||||||||||
Sbjct: 2 gagtagaatgcagccaaggatgacttgccgga 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 ggcaagttgtccttggctacatt 114
|||||||||||||||||||||||
Sbjct: 57 ggcaagttgtccttggctacatt 79
>RF00645;MIR169_2;AL392145.1/61605-61729 3702:Arabidopsis thaliana
(thale cress)
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 aatgcagccaaggatgacttgccggaa 35
|||||||||||||||||||||||||||
Sbjct: 8 aatgcagccaaggatgacttgccggaa 34
>RF00645;MIR169_2;AM476671.2/16778-16661 29760:Vitis vinifera
Length = 118
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccggaatttat 40
||||||||||| ||||||||||||||||| || ||||||
Sbjct: 1 agagtggaatgtagccaaggatgacttgctggcatttat 39
>RF00645;MIR169_2;ABXC01006862.1/83418-83293 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gaatgcagccaaggatgacttgccgga 34
|||||||||||||||||||||||||||
Sbjct: 7 gaatgcagccaaggatgacttgccgga 33
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 ggaatgcagccaaggatgacttgccgg 33
|||||||||||||||||||||||||||
Sbjct: 6 ggaatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AARH01007178.1/187626-187874 3694:Populus
trichocarpa
Length = 249
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccggaat 36
||||||||||||||||||||||||||
Sbjct: 14 tgcagccaaggatgacttgccggaat 39
>RF00645;MIR169_2;AC135313.13/45543-45452 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 agtggaatgcagccaaggatgacttgccgg 33
|||||| |||||||||||||||||||||||
Sbjct: 3 agtggagtgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 agtggaatgcagccaaggatgacttgccgg 33
|||| |||||||||||||||||||||||||
Sbjct: 6 agtgaaatgcagccaaggatgacttgccgg 35
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 agtggaatgcagccaaggatgacttgccgg 33
|||||| |||||||||||||||||||||||
Sbjct: 3 agtggattgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABIM01024501.1/10420-10301 3649:Carica papaya
(papaya)
Length = 120
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccgga 34
||||| || ||||||||||||||||||||||||
Sbjct: 1 agagttgagtgcagccaaggatgacttgccgga 33
>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya
(papaya)
Length = 122
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 aatgcagccaaggatgacttgccgg 33
|||||||||||||||||||||||||
Sbjct: 8 aatgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AARH01000003.1/78094-77924 3694:Populus
trichocarpa
Length = 171
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 agtggaatgcagccaaggatgacttgccg 32
||||| |||||||||||||||||||||||
Sbjct: 3 agtggtatgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccgg 33
||||||||||||||||||||||||
Sbjct: 12 atgcagccaaggatgacttgccgg 35
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccgg 33
|||||| ||| |||||||||||||||||||||
Sbjct: 1 agagtgtaattcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 2 agagtggaatgcagccaaggatgacttgccgg 33
|||||| ||| |||||||||||||||||||||
Sbjct: 1 agagtgtaattcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC148485.10/86560-86786 3880:Medicago truncatula
(barrel medic)
Length = 227
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccgg 33
||||||||||||||||||||||||
Sbjct: 10 atgcagccaaggatgacttgccgg 33
>RF00645;MIR169_2;BABK01024578.1/123-239 34305:Lotus japonicus
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccgga 34
||||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccgga 33
>RF00645;MIR169_2;BT060668.1/99-217 4577:Zea mays
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccgg 33
||||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABXC01004427.1/51987-51869 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccgg 33
||||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
Japonica Group
Length = 130
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccgg 33
||||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AL662968.3/150189-150074 39947:Oryza sativa
Japonica Group
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccgg 33
||||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccgg 33
|||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccgg 34
>RF00645;MIR169_2;AARH01007968.1/101578-101471 3694:Populus
trichocarpa
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccg 32
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01005671.1/55685-55803 3694:Populus
trichocarpa
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccg 32
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AASG02001387.1/35857-35778 3988:Ricinus communis
(castor bean)
Length = 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccg 32
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 tggcaagttgtccttggctacat 113
|||||||||||||||||||||||
Sbjct: 48 tggcaagttgtccttggctacat 70
>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
(castor bean)
Length = 252
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccgg 33
|||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccgg 34
>RF00645;MIR169_2;AASG02009044.1/9839-9706 3988:Ricinus communis
(castor bean)
Length = 134
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 atgcagccaaggatgacttgccg 32
|||||||||||||||||||||||
Sbjct: 9 atgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccgg 33
|||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccgg 34
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccgg 33
|||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccgg 33
|||||||||||||||||||||||
Sbjct: 13 tgcagccaaggatgacttgccgg 35
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 3 gagtggaatgcagccaaggatgacttgccgg 33
||||||||| ||||||||||||||||||||
Sbjct: 2 gagtggaatagagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccgg 33
|||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccgg 34
>RF00645;MIR169_2;AC189369.2/97764-97940 51351:Brassica rapa
subsp. pekinensis
Length = 177
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccg 32
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AP000603.1/13143-12929 3702:Arabidopsis thaliana
(thale cress)
Length = 215
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccg 32
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AARH01007603.1/205939-205816 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 87 accctggcaagttgtccttggctacatttg 116
|||| |||||||||| ||||||||||||||
Sbjct: 88 accccggcaagttgttcttggctacatttg 117
>RF00645;MIR169_2;AARH01003557.1/353551-353722 3694:Populus
trichocarpa
Length = 172
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gcagccaaggatgacttgccgg 33
||||||||||||||||||||||
Sbjct: 11 gcagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AASG02000349.1/3893-3789 3988:Ricinus communis
(castor bean)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 gaatgcagccaaggatgacttgccgg 33
|||| |||||||||||||||||||||
Sbjct: 8 gaatacagccaaggatgacttgccgg 33
>RF00645;MIR169_2;AASG02006838.1/6632-6742 3988:Ricinus communis
(castor bean)
Length = 111
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccg 32
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC157504.2/38883-38997 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 agtggaatgcagccaaggatgacttgccgg 33
|||| |||| ||||||||||||||||||||
Sbjct: 3 agtgaaatggagccaaggatgacttgccgg 32
>RF00645;MIR169_2;AC186138.3/99196-99295 3880:Medicago truncatula
(barrel medic)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 agtggaatgcagccaaggatgacttgccgg 33
|||||||||||||||||| ||| |||||||
Sbjct: 3 agtggaatgcagccaagggtgatttgccgg 32
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 agtggaatgcagccaaggatgacttgccgg 33
|||| |||| ||||||||||||||||||||
Sbjct: 3 agtgaaatgaagccaaggatgacttgccgg 32
>RF00645;MIR169_2;CAAP02000116.1/144670-144487 29760:Vitis
vinifera
Length = 184
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccg 32
||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccg 33
>RF00645;MIR169_2;CAAP02000269.1/151468-151586 29760:Vitis
vinifera
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccg 32
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM434841.1/8747-8930 29760:Vitis vinifera
Length = 184
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccg 32
||||||||||||||||||||||
Sbjct: 12 tgcagccaaggatgacttgccg 33
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 5 gtggaatgcagccaaggatgacttgccggaattt 38
||||||| |||||||||||||||||||| ||||
Sbjct: 4 gtggaatagagccaaggatgacttgccggcattt 37
>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccg 32
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
>RF00645;MIR169_2;AP008207.1/8728130-8728248 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcagccaaggatgacttgccg 32
||||||||||||||||||||||
Sbjct: 10 tgcagccaaggatgacttgccg 31
