miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41604_vvi-MIR169h:mirbase
Length = 101
Score = 200 bits (101), Expect = 1e-52
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccgtcctttgtcactatttgaggcattaactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccgtcctttgtcactatttgaggcattaactg 60
Query: 61 gtcacgcacggagggttatccttgactcctttagctcctct 101
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtcacgcacggagggttatccttgactcctttagctcctct 101
>41605_vvi-MIR169i:mirbase
Length = 105
Score = 87.7 bits (44), Expect = 1e-18
Identities = 90/105 (85%), Gaps = 4/105 (3%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccgtcctttgtca----ctatttgaggcatta 56
||||||||||||||||||||||| || |||||| ||| ||| |||||||||| |||
Sbjct: 1 agggtggaattgagccaaggatgactggccgtcatttttcagttggtatttgaggcttta 60
Query: 57 actggtcacgcacggagggttatccttgactcctttagctcctct 101
|||||||| |||||| |||||||| || ||||||||||||||||
Sbjct: 61 actggtcatgcacggctggttatccctgtctcctttagctcctct 105
>41608_vvi-MIR169l:mirbase
Length = 103
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccgtcctttg 38
||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 agggtggaattgagccaaggatgacttgccgtcctttg 38
>41598_vvi-MIR169b:mirbase
Length = 105
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 2 gggtggaattgagccaaggatggcttgccgtc 33
|||| |||||||||||||||||||||||||||
Sbjct: 2 gggtcgaattgagccaaggatggcttgccgtc 33
>41617_vvi-MIR169u:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccgt 32
|||||||||||||| |||||||| ||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccgt 32
>41612_vvi-MIR169p:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatggcttgccg 31
|||||||||||||||||||| |||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccg 31
>41614_vvi-MIR169r:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccg 31
|||||||||||||| |||||||| |||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>41613_vvi-MIR169q:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccg 31
|||||||||| |||||||||||| |||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccg 31
>41611_vvi-MIR169o:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaattgagccaaggatggcttgccg 31
|||||||| |||||||||||||| |||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccg 31
>40050_ath-MIR169f:mirbase
Length = 167
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggaattgagccaaggatggcttgccg 31
||||||||||||||||||| |||||||
Sbjct: 26 tggaattgagccaaggatgacttgccg 52
>39839_aly-MIR169f:mirbase
Length = 184
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggaattgagccaaggatggcttgccg 31
||||||||||||||||||| |||||||
Sbjct: 35 tggaattgagccaaggatgacttgccg 61
>41610_vvi-MIR169n:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatggcttgccg 31
||||||| |||||||||||| |||||||
Sbjct: 4 gtggaatagagccaaggatgacttgccg 31
>41609_vvi-MIR169m:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatggcttgccg 31
|||||| ||||||||||||| |||||||
Sbjct: 4 gtggaagtgagccaaggatgacttgccg 31
>41368_ptc-MIR169n:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 4 gtggaattgagccaaggatggcttgccg 31
||||| |||||||||||||| |||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccg 31