miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 192 bits (97), Expect = 6e-49
Identities = 101/103 (98%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccgccatcagcagcaagcattgaagctttaac 60
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccgccatctgcmgcaagcattgaagctttaac 60
Query: 61 tgggcatggacagcgagttattcttggctcatgcggcccctct 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggcatggacagcgagttattcttggctcatgcggcccctct 103
>RF00645;MIR169_2;AARH01007603.1/200394-200284 3694:Populus
trichocarpa
Length = 111
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccgc 32
|||||||||||||||||||||||||||||
Sbjct: 4 gtggatttgagccaaggatgacttgccgc 32
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 4 gtggatttgagccaaggatgacttgccgccatcagcagcaag 45
||||| |||||||||||||||||||||| || | ||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccggcagctgcagcaag 45
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atttgagccaaggatgacttgccg 31
||||||||||||||||||||||||
Sbjct: 8 atttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 atttgagccaaggatgacttgccg 31
||||||||||||||||||||||||
Sbjct: 8 atttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/169306-169201 29760:Vitis
vinifera
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccgccatcagcagcaag 45
|||||||||||||| ||||||| |||| ||||||||
Sbjct: 11 ttgagccaaggatggcttgccgtcatctgcagcaag 46
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 tggatttgagccaaggatgacttgccg 31
|||| ||||||||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/19601-19493 29760:Vitis vinifera
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| ||||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/25331-25222 29760:Vitis vinifera
Length = 110
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| ||||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02002239.1/1615-1515 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| |||||||||||||| |||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccg 31
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| | ||||||||||||||||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccg 31
>RF00645;MIR169_2;AM430160.2/5320-5211 29760:Vitis vinifera
Length = 110
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggatttgagccaaggatgacttgccg 31
|||||||| ||||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AY551196.1/39-136 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AL161555.2/100990-100886 3702:Arabidopsis
thaliana (thale cress)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AC024260.4/30609-30513 3702:Arabidopsis thaliana
(thale cress)
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgagccaaggatgacttgccg 31
||||||||||||||||||||||
Sbjct: 10 ttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;AASG02000270.1/34976-34853 3988:Ricinus communis
(castor bean)
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgagccaaggatgacttgccgc 32
||||||||||||||||||||||
Sbjct: 11 tgagccaaggatgacttgccgc 32
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccgccatcagcagcaag 45
|||||||||||||||||||| || | ||||||||
Sbjct: 12 gagccaaggatgacttgccggcaactgcagcaag 45
