miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 agggtggaatagagccaaggatgacttgccggcatttgcagtaagtctatattaactgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggtggaatagagccaaggatgacttgccggcatttgcagtaagtctatattaactgga 60
Query: 61 acagccggcatgtaatcctggctctatttggtcctct 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagccggcatgtaatcctggctctatttggtcctct 97
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 gtggaatagagccaaggatgacttgccggca 34
|||||||||||||||||||||||||||||||
Sbjct: 4 gtggaatagagccaaggatgacttgccggca 34
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 4 gtggaatagagccaaggatgacttgccggca 34
||||||| |||||||||||||||||||||||
Sbjct: 4 gtggaattgagccaaggatgacttgccggca 34
>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
bicolor (sorghum)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 13 agccaaggatgacttgccggcattt 37
|||||||||||||||||||||||||
Sbjct: 53 agccaaggatgacttgccggcattt 29
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcattt 37
|||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcattt 37
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcattt 37
|||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcattt 37
>RF00645;MIR169_2;AASG02000349.1/3893-3789 3988:Ricinus communis
(castor bean)
Length = 105
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 7 gaatagagccaaggatgacttgccggcat 35
||||| |||||||||||||||||||||||
Sbjct: 8 gaatacagccaaggatgacttgccggcat 36
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum
bicolor (sorghum)
Length = 130
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcattt 37
|||||||||||||||||||||||||
Sbjct: 12 agccaaggatgacttgccggcattt 36
>RF00645;MIR169_2;AB022220.1/69927-69801 3702:Arabidopsis thaliana
(thale cress)
Length = 127
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 tggaatagagccaaggatgacttgccgg 32
|||||| |||||||||||||||||||||
Sbjct: 5 tggaattgagccaaggatgacttgccgg 32
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccggcat 35
||||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggcat 35
>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccggcat 35
||||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggcat 35
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcatt 36
||||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggcatt 38
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcatt 36
||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatt 36
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggcatt 36
||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatt 36
>RF00645;MIR169_2;AC186138.3/102418-102528 3880:Medicago
truncatula (barrel medic)
Length = 111
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 18 aggatgacttgccggcatttgcagtaa 44
|||||||||||||||||||||| ||||
Sbjct: 17 aggatgacttgccggcatttgctgtaa 43
>RF00645;MIR169_2;CAAP02000146.1/19601-19493 29760:Vitis vinifera
Length = 109
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaatagagccaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;AM466421.1/3134-3032 29760:Vitis vinifera
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaatagagccaaggatgacttgccg 31
|||||||| | ||||||||||||||||||||
Sbjct: 1 agggtggatttgagccaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02000146.1/25331-25222 29760:Vitis vinifera
Length = 110
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaatagagccaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;CAAP02002239.1/1615-1515 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaatagagccaaggatgacttgccg 31
|||||||||| |||||||||||| |||||||
Sbjct: 1 agggtggaattgagccaaggatggcttgccg 31
>RF00645;MIR169_2;AM430160.2/5320-5211 29760:Vitis vinifera
Length = 110
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 agggtggaatagagccaaggatgacttgccg 31
|||||||||| ||| ||||||||||||||||
Sbjct: 1 agggtggaattgagtcaaggatgacttgccg 31
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggca 36
>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01003557.1/353551-353722 3694:Populus
trichocarpa
Length = 172
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AC157504.2/27710-27818 3880:Medicago truncatula
(barrel medic)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 gagccaaggatgacttgccggc 33
||||||||||||||||||||||
Sbjct: 12 gagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggca 37
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggca 37
>RF00645;MIR169_2;AM476671.2/16778-16661 29760:Vitis vinifera
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 gtggaatagagccaaggatgacttgccggcattt 37
||||||| ||||||||||||||||| |||||||
Sbjct: 4 gtggaatgtagccaaggatgacttgctggcattt 37
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggca 36
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 agccaaggatgacttgccggca 34
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
