miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41627_vvi-MIR171f:mirbase
Length = 103
Score = 204 bits (103), Expect = 9e-54
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 1 ttgaagaaagcgatgttggtgaggttcaatctgaagattgatttatgcttgaatgtaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgaagaaagcgatgttggtgaggttcaatctgaagattgatttatgcttgaatgtaaaa 60
Query: 61 actgatctcagattgagccgcgccaatatcacttttctgtggc 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 actgatctcagattgagccgcgccaatatcacttttctgtggc 103
>41384_ptc-MIR171d:mirbase
Length = 100
Score = 97.6 bits (49), Expect = 2e-21
Identities = 85/96 (88%), Gaps = 2/96 (2%)
Strand = Plus / Plus
Query: 4 aagaaagcgatgttggtgaggttcaatctgaagattgatttatgct--tgaatgtaaaaa 61
|||||||||||||||||||||||||||| ||||| |||||| | |||| ||||||
Sbjct: 3 aagaaagcgatgttggtgaggttcaatccgaagacagatttacacgagtgaaagtaaaat 62
Query: 62 ctgatctcagattgagccgcgccaatatcacttttc 97
| ||||||||||||||||||||||||||||||||||
Sbjct: 63 ccgatctcagattgagccgcgccaatatcacttttc 98
>41383_ptc-MIR171c:mirbase
Length = 104
Score = 77.8 bits (39), Expect = 1e-15
Identities = 83/98 (84%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 4 aagaaagcgatgttggtgaggttcaatctgaagattgatttatgcttgaa------tgta 57
|||||||||||||||||||||||||||| ||||| |||||| | |||| ||||
Sbjct: 3 aagaaagcgatgttggtgaggttcaatccgaagacggatttacacgtgaaagtaattgta 62
Query: 58 aaaactgatctcagattgagccgcgccaatatcacttt 95
||| ||||||||||||||||||||||||||||||||
Sbjct: 63 aaatacgatctcagattgagccgcgccaatatcacttt 100
>41118_tcc-MIR171c:mirbase
Length = 123
Score = 77.8 bits (39), Expect = 1e-15
Identities = 83/98 (84%), Gaps = 6/98 (6%)
Strand = Plus / Plus
Query: 4 aagaaagcgatgttggtgaggttcaatctgaagattgatttatgcttgaat------gta 57
|||||||||||||||||||||||||||| ||||| |||||| || || || |||
Sbjct: 11 aagaaagcgatgttggtgaggttcaatccgaagacggatttacgcatgcattcagtcgta 70
Query: 58 aaaactgatctcagattgagccgcgccaatatcacttt 95
||| ||||||||||||||||||||||||||||||||
Sbjct: 71 aaatacgatctcagattgagccgcgccaatatcacttt 108
>41541_sly-MIR171d:mirbase
Length = 112
Score = 75.8 bits (38), Expect = 6e-15
Identities = 77/89 (86%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 8 aagcgatgttggtgaggttcaatctgaagattgatttatgcttgaat--gtaaaaactga 65
|||||||||||||||||||||||| ||||| |||||||||| | ||||| | ||
Sbjct: 8 aagcgatgttggtgaggttcaatccgaagacgaatttatgcttattttcgtaaagaacga 67
Query: 66 tctcagattgagccgcgccaatatcactt 94
|||||||||||||||||||||||||||||
Sbjct: 68 tctcagattgagccgcgccaatatcactt 96
>40699_mtr-MIR171e:mirbase
Length = 93
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 64 gatctcagattgagccgcgccaatatcacttt 95
||||||||||||||||||||||||||||||||
Sbjct: 62 gatctcagattgagccgcgccaatatcacttt 93
>40365_rco-MIR171g:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 64 gatctcagattgagccgcgccaatatcacttt 95
||||||||||||||||||||||||||||||||
Sbjct: 58 gatctcagattgagccgcgccaatatcacttt 89
>41117_tcc-MIR171b:mirbase
Length = 120
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 10 gcgatgttggtgaggttcaatctgaagat 38
|||||||||||||||||||||||||||||
Sbjct: 19 gcgatgttggtgaggttcaatctgaagat 47
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 68 tcagattgagccgcgccaatatcacttt 95
||||||||||||||||||||||||||||
Sbjct: 78 tcagattgagccgcgccaatatcacttt 105
>41626_vvi-MIR171e:mirbase
Length = 103
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 64 gatctcagattgagccgcgccaatatcacttt 95
|||||| |||||||||||||||||||||||||
Sbjct: 64 gatctctgattgagccgcgccaatatcacttt 95
>39479_ppt-MIR171b:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ctcagattgagccgcgccaatatcac 92
||||||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatatcac 86
>39478_ppt-MIR171a:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 68 tcagattgagccgcgccaatatcac 92
|||||||||||||||||||||||||
Sbjct: 61 tcagattgagccgcgccaatatcac 85
>42555_sbi-MIR171j:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcactt 94
||||||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatcactt 107
>39739_smo-MIR171d:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 tctcagattgagccgcgccaatatcac 92
||||| |||||||||||||||||||||
Sbjct: 65 tctcaaattgagccgcgccaatatcac 91
>41540_sly-MIR171c:mirbase
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 79 gattgagccgcgccaatatcac 100
>41231_csi-MIR171a:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatcac 89
>41211_ccl-MIR171:mirbase
Length = 321
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatcac 92
||||||||||||||||||||||
Sbjct: 123 gattgagccgcgccaatatcac 144
>42774_zma-MIR171n:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
>42761_zma-MIR171a:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>42552_sbi-MIR171g:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 58 gattgagccgcgccaatatc 77
>41981_osa-MIR171a:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 9 agcgatgttggtgaggttcaatctgaagattg 40
|||||| |||||||||||||||| || |||||
Sbjct: 7 agcgatattggtgaggttcaatccgatgattg 38
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87
>41764_bdi-MIR171a:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 51 gattgagccgcgccaatatc 70
>41391_ptc-MIR171k:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>41116_tcc-MIR171a:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 80 gattgagccgcgccaatatc 99
>40322_bra-MIR171e:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>40291_bna-MIR171g:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>40290_bna-MIR171f:mirbase
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 85 gattgagccgcgccaatatc 104
>40060_ath-MIR171a:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 89 gattgagccgcgccaatatc 108
>39849_aly-MIR171a:mirbase
Length = 198
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 gattgagccgcgccaatatc 90
||||||||||||||||||||
Sbjct: 131 gattgagccgcgccaatatc 150
>39736_smo-MIR171a:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 70 agattgagccgcgccaatatcact 93
||||||||||| ||||||||||||
Sbjct: 102 agattgagccgtgccaatatcact 125
