miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01002961.1/62223-62119 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 77.8 bits (39), Expect = 4e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 109 gttgtcgtcgaccggagatttcggaccaggcttcaatcccttt 151
|||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 60 gttgtcgttgaccggagatttcggaccaggcttcaatcccttt 102
Score = 75.8 bits (38), Expect = 2e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 19 agggggattgttgtctggctcggggtctccggtcgaga 56
||||||||||||||||||||||||||||||||||||||
Sbjct: 4 agggggattgttgtctggctcggggtctccggtcgaga 41
>RF00075;mir-166;BT056134.1/436-541 4577:Zea mays
Length = 106
Score = 73.8 bits (37), Expect = 7e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 111 tgtcgtcgaccggagatttcggaccaggcttcaatcccttt 151
||||||||||||||||| |||||||||||||||||||||||
Sbjct: 63 tgtcgtcgaccggagatctcggaccaggcttcaatcccttt 103
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 19 agggggattgttgtctggctcggggtctccggtcgaga 56
||||||||||||||||||||||| ||||||||||||||
Sbjct: 4 agggggattgttgtctggctcggtgtctccggtcgaga 41
>RF00075;mir-166;ABXC01001421.1/165860-165981 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 129 tcggaccaggcttcaatcccttt 151
|||||||||||||||||||||||
Sbjct: 97 tcggaccaggcttcaatcccttt 119
>RF00075;mir-166;AP004125.3/115130-115014 39947:Oryza sativa
Japonica Group
Length = 117
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 129 tcggaccaggcttcaatcccttt 151
|||||||||||||||||||||||
Sbjct: 92 tcggaccaggcttcaatcccttt 114
>RF00075;mir-166;AAAA02007467.1/8861-8977 39946:Oryza sativa Indica
Group
Length = 117
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 129 tcggaccaggcttcaatcccttt 151
|||||||||||||||||||||||
Sbjct: 92 tcggaccaggcttcaatcccttt 114
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 129 tcggaccaggcttcaatcccttt 151
|||||||||||||||||||||||
Sbjct: 82 tcggaccaggcttcaatcccttt 104
