miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcctca 119
||||||||||||||||||||||||||
Sbjct: 84 gatctcggaccaggcttcattcctca 109
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcctca 119
||||||||||||||||||||||||||
Sbjct: 152 gatctcggaccaggcttcattcctca 177
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcctca 119
||||||||||||||||||||||||||
Sbjct: 137 gatctcggaccaggcttcattcctca 162
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 91 tgagatctcggaccaggcttcattcc 116
||||||||||||||||||||||||||
Sbjct: 86 tgagatctcggaccaggcttcattcc 111
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcctca 119
||||||||||||||||||||||||||
Sbjct: 106 gatctcggaccaggcttcattcctca 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tctggaatggaggctggtccaagatc 45
|||||||||||||||| |||||||||
Sbjct: 5 tctggaatggaggctgatccaagatc 30
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 92 gagatctcggaccaggcttcattcc 116
|||||||||||||||||||||||||
Sbjct: 88 gagatctcggaccaggcttcattcc 112
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcct 117
||||||||||||||||||||||||
Sbjct: 288 gatctcggaccaggcttcattcct 311
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcct 117
||||||||||||||||||||||||
Sbjct: 295 gatctcggaccaggcttcattcct 318
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcct 117
||||||||||||||||||||||||
Sbjct: 93 gatctcggaccaggcttcattcct 116
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 agatctcggaccaggcttcattcc 116
||||||||||||||||||||||||
Sbjct: 84 agatctcggaccaggcttcattcc 107
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 agatctcggaccaggcttcattcc 116
||||||||||||||||||||||||
Sbjct: 94 agatctcggaccaggcttcattcc 117
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 agatctcggaccaggcttcattcc 116
||||||||||||||||||||||||
Sbjct: 184 agatctcggaccaggcttcattcc 207
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 96 tctcggaccaggcttcattcctca 119
||||||||||||||||||||||||
Sbjct: 89 tctcggaccaggcttcattcctca 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 22 tggaatggaggctggtccaagatcct 47
|||||||||||||| |||||||||||
Sbjct: 7 tggaatggaggctgatccaagatcct 32
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 agatctcggaccaggcttcattcc 116
||||||||||||||||||||||||
Sbjct: 161 agatctcggaccaggcttcattcc 184
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 agatctcggaccaggcttcattcc 116
||||||||||||||||||||||||
Sbjct: 130 agatctcggaccaggcttcattcc 153
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 agatctcggaccaggcttcattcc 116
||||||||||||||||||||||||
Sbjct: 150 agatctcggaccaggcttcattcc 173
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 agatctcggaccaggcttcattcc 116
||||||||||||||||||||||||
Sbjct: 149 agatctcggaccaggcttcattcc 172
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 96 gatctcggaccaggcttcattcc 118
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 109 gatctcggaccaggcttcattcc 131
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 65 gatctcggaccaggcttcattcc 87
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 63 gatctcggaccaggcttcattcc 85
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 65 gatctcggaccaggcttcattcc 87
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 63 gatctcggaccaggcttcattcc 85
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 95 atctcggaccaggcttcattcct 117
|||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcct 164
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 96 tctcggaccaggcttcattcctc 118
|||||||||||||||||||||||
Sbjct: 78 tctcggaccaggcttcattcctc 100
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 61 gatctcggaccaggcttcattcc 83
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 96 tctcggaccaggcttcattcctc 118
|||||||||||||||||||||||
Sbjct: 61 tctcggaccaggcttcattcctc 83
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattcc 90
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattcc 90
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 92 gatctcggaccaggcttcattcc 114
>RF00075;mir-166;AC138001.2/40361-40495 39947:Oryza sativa Japonica
Group
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 agatctcggaccaggcttcattcctca 119
|||||||||| ||||||||||||||||
Sbjct: 105 agatctcggatcaggcttcattcctca 131
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 gatctcggaccaggcttcattcc 116
|||||||||||||||||||||||
Sbjct: 74 gatctcggaccaggcttcattcc 96
>RF00075;mir-166;AARH01003279.1/141842-141699 3694:Populus
trichocarpa
Length = 144
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 96 tctcggaccaggcttcattcct 117
||||||||||||||||||||||
Sbjct: 117 tctcggaccaggcttcattcct 138
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 atctcggaccaggcttcattcc 116
||||||||||||||||||||||
Sbjct: 76 atctcggaccaggcttcattcc 97
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 ctcggaccaggcttcattcctc 118
||||||||||||||||||||||
Sbjct: 72 ctcggaccaggcttcattcctc 93
