miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 121 bits (61), Expect = 2e-27
Identities = 97/106 (91%), Gaps = 6/106 (5%)
Strand = Plus / Plus
Query: 12 ttaagcagctgaagctgccagcatgatctgatc----tttcgtttactggc-aactttgg 66
||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||
Sbjct: 5 ttaagcagctgaagctgccagcatgatctgatcttaatttcttttactggcaaacttcgg 64
Query: 67 atacctaagatccagatcgtgctgcgcagtttcacctgctaattgg 112
|| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 65 atgcctaagat-cagatcgtgctgcgcagtttcacctgctaattgg 109
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 12 ttaagcagctgaagctgccagcatgatctgatcttt 47
||||||||||||||||||||||||||||||||||||
Sbjct: 5 ttaagcagctgaagctgccagcatgatctgatcttt 40
Score = 63.9 bits (32), Expect = 4e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 70 cctaagatccagatcgtgctgcgcagtttcacctgctaat 109
|||||||| |||||||||||||||||||||| ||||||||
Sbjct: 87 cctaagattcagatcgtgctgcgcagtttcatctgctaat 126
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctgat 43
||||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctgat 43
||||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 taagcagctgaagctgccagcatgatctga 42
||||||| ||||||||||||||||||||||
Sbjct: 6 taagcaggtgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 15 agcagctgaagctgccagcatgatctgatcttt 47
||||| |||||||||||||||||||||| ||||
Sbjct: 8 agcagttgaagctgccagcatgatctgagcttt 40
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctg 41
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctg 41
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 agctgaagctgccagcatgatctg 41
||||||||||||||||||||||||
Sbjct: 11 agctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgatctttc 48
|||||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctgaactttc 41
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgatc 44
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgatc 37
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 aagcagctgaagctgccagcatgatct 40
|||||| ||||||||||||||||||||
Sbjct: 7 aagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgat 43
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gctgaagctgccagcatgatctg 41
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgat 43
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgat 36
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagctgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagctgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagctgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagctgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagctgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagctgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 agcagctgaagctgccagcatgatct 40
||||| ||||||||||||||||||||
Sbjct: 8 agcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01000326.1/41757-41921 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
>RF00640;MIR167_1;ABXC01000720.1/131669-131557 4558:Sorghum
bicolor (sorghum)
Length = 113
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctga 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctga 35
