miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 75.8 bits (38), Expect = 1e-13
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 11 tgtgagaggttgaagctgccagcatgatctggctgctcagacgccg 56
|||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 4 tgtgagagcttgaagctgccagcatgatctggctgctcaaacgccg 49
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 tgtgagaggttgaagctgccagcatgatctgg 42
||||||||||||||||||||||||||||||||
Sbjct: 4 tgtgagaggttgaagctgccagcatgatctgg 35
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 104 ccagatcatgttgcagcttcactctctcgca 134
|||||||||||||||||||||||||||||||
Sbjct: 86 ccagatcatgttgcagcttcactctctcgca 116
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 tgtgagaggttgaagctgccagcatgatctg 41
|||||||||||||||||||||||||||||||
Sbjct: 4 tgtgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 tgagaggttgaagctgccagcatgatctgg 42
||||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 tgagaggttgaagctgccagcatgatctgg 42
||||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 tgagaggttgaagctgccagcatgatctgg 42
||||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 60.0 bits (30), Expect = 9e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 tgagaggttgaagctgccagcatgatctgg 42
||||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 11 tgtgagaggttgaagctgccagcatgatctgg 42
||||||||| ||||||||||||||||||||||
Sbjct: 4 tgtgagaggctgaagctgccagcatgatctgg 35
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 105 cagatcatgttgcagcttcactctctc 131
|||||||||||||||||||||||||||
Sbjct: 175 cagatcatgttgcagcttcactctctc 201
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 105 cagatcatgttgcagcttcactctctc 131
|||||||||||||||||||||||||||
Sbjct: 247 cagatcatgttgcagcttcactctctc 273
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 tgtgagaggttgaagctgccagcatgatctgg 42
|||||||| ||||||||||||||||||||||
Sbjct: 4 tgtgagagaatgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 tgagaggttgaagctgccagcatgatctgg 42
|||||| |||||||||||||||||||||||
Sbjct: 6 tgagagattgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatctgg 42
||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatctg 41
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatctg 41
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgg 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgg 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgg 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gttgaagctgccagcatgatct 40
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgg 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tgaagctgccagcatgatctgg 42
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
