miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 149 bits (75), Expect = 8e-36
Identities = 97/103 (94%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 1 gagtgaagctgccagcatgatctagctctgagtgatcacccgaaaaagaacaatagttct 60
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagctctgagtgatcacccg-agaagaacaatagttcg 69
Query: 61 aggtggtcatgccttgctaggtcatgctgctgcagcctcactt 103
|||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 70 aggtggtctcgccttgctaggtcatgctgcggcagcctcactt 112
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 117 bits (59), Expect = 3e-26
Identities = 93/103 (90%), Gaps = 1/103 (0%)
Strand = Plus / Plus
Query: 1 gagtgaagctgccagcatgatctagctctgagtgatcacccgaaaaagaacaatagttct 60
|||||||||||||||||||||||||||| |||||||||| ||| | ||||||||| ||
Sbjct: 11 gagtgaagctgccagcatgatctagctcggagtgatcacgcgagga-gaacaatagctcg 69
Query: 61 aggtggtcatgccttgctaggtcatgctgctgcagcctcactt 103
|||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 70 aggtggtcatgccttgctagatcatgctgtggcagcctcactt 112
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa Japonica
Group
Length = 152
Score = 73.8 bits (37), Expect = 4e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 63 gtggtcatgccttgctaggtcatgctgctgcagcctcactt 103
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 103 gtggtcatgccttgctaggtcatgctgcggcagcctcactt 143
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 gagtgaagctgccagcatgatctagctctgagtgatca 38
||||||||||||||||||||||||||||||| ||||||
Sbjct: 11 gagtgaagctgccagcatgatctagctctgaatgatca 48
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 gagtgaagctgccagcatgatctagctctga 31
|||||||||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagctctga 41
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gagtgaagctgccagcatgatctagct 27
|||||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 agtgaagctgccagcatgatctagct 27
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 agtgaagctgccagcatgatctagct 27
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 agtgaagctgccagcatgatctagct 27
||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 3 gtgaagctgccagcatgatctagct 27
|||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agtgaagctgccagcatgatctag 25
||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctag 35
>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gagtgaagctgccagcatgatcta 24
||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
bicolor (sorghum)
Length = 223
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gagtgaagctgccagcatgatcta 24
||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
(thale cress)
Length = 116
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 agtgaagctgccagcatgatcta 24
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
trichocarpa
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 agtgaagctgccagcatgatcta 24
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 agtgaagctgccagcatgatcta 24
|||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tgaagctgccagcatgatctag 25
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gtgaagctgccagcatgatcta 24
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
Indica Group
Length = 152
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gtgaagctgccagcatgatcta 24
||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34
