miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
          Length = 121

 Score =  159 bits (80), Expect = 8e-39
 Identities = 92/95 (96%), Gaps = 2/95 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtgaagctgccagcatgatctagctcggagtgatcacgcgaggaga--catagctcga 58
           ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||
Sbjct: 11  gagtgaagctgccagcatgatctagctcggagtgatcacgcgaggagaacaatagctcga 70

                                              
Query: 59  ggtggtcatgccttgctagatcatgctgtggcagc 93
           |||||||||||||||||||||||||||||||||||
Sbjct: 71  ggtggtcatgccttgctagatcatgctgtggcagc 105




>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
           (sorghum)
          Length = 121

 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 84/95 (88%), Gaps = 2/95 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtgaagctgccagcatgatctagctcggagtgatcacgcgaggaga--catagctcga 58
           |||||||||||||||||||||||||||| |||||||||| |||| |||   |||| ||||
Sbjct: 11  gagtgaagctgccagcatgatctagctctgagtgatcacccgagaagaacaatagttcga 70

                                              
Query: 59  ggtggtcatgccttgctagatcatgctgtggcagc 93
           |||||||  |||||||||| |||||||| ||||||
Sbjct: 71  ggtggtctcgccttgctaggtcatgctgcggcagc 105




>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
          Japonica Group
          Length = 152

 Score = 60.0 bits (30), Expect = 6e-09
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                
Query: 1  gagtgaagctgccagcatgatctagctcggagtgatca 38
          |||||||||||||||||||||||||||| || ||||||
Sbjct: 11 gagtgaagctgccagcatgatctagctctgaatgatca 48



 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 60  gtggtcatgccttgctagatcatgctgtggcagc 93
           |||||||||||||||||| |||||||| ||||||
Sbjct: 103 gtggtcatgccttgctaggtcatgctgcggcagc 136




>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
          Length = 140

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 1  gagtgaagctgccagcatgatctagctc 28
          ||||||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagctc 38




>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
          (sorghum)
          Length = 151

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  gagtgaagctgccagcatgatctagct 27
          |||||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatctagct 37




>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
          (papaya)
          Length = 108

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 2  agtgaagctgccagcatgatctagct 27
          ||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37




>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
          Length = 122

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 2  agtgaagctgccagcatgatctagct 27
          ||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37




>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
          Length = 118

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 2  agtgaagctgccagcatgatctagct 27
          ||||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctagct 37




>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
          (castor bean)
          Length = 143

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 3  gtgaagctgccagcatgatctagct 27
          |||||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatctagct 37




>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
          (barrel medic)
          Length = 334

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 2  agtgaagctgccagcatgatctag 25
          ||||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatctag 35




>RF00640;MIR167_1;EU084500.1/298-436 260130:Acca sellowiana
          Length = 139

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gagtgaagctgccagcatgatcta 24
          ||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatcta 34




>RF00640;MIR167_1;ABXC01000087.1/205849-206071 4558:Sorghum
          bicolor (sorghum)
          Length = 223

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gagtgaagctgccagcatgatcta 24
          ||||||||||||||||||||||||
Sbjct: 11 gagtgaagctgccagcatgatcta 34




>RF00640;MIR167_1;EU548982.1/151-266 3702:Arabidopsis thaliana
          (thale cress)
          Length = 116

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  agtgaagctgccagcatgatcta 24
          |||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34




>RF00640;MIR167_1;AARH01001059.1/160212-160110 3694:Populus
          trichocarpa
          Length = 103

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  agtgaagctgccagcatgatcta 24
          |||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34




>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
          Length = 106

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 2  agtgaagctgccagcatgatcta 24
          |||||||||||||||||||||||
Sbjct: 12 agtgaagctgccagcatgatcta 34




>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
          pekinensis
          Length = 124

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 4  tgaagctgccagcatgatctag 25
          ||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35




>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
          Length = 112

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 3  gtgaagctgccagcatgatcta 24
          ||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34




>RF00640;MIR167_1;AAAA02011018.1/78132-77981 39946:Oryza sativa
          Indica Group
          Length = 152

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 3  gtgaagctgccagcatgatcta 24
          ||||||||||||||||||||||
Sbjct: 13 gtgaagctgccagcatgatcta 34