miRNEST 2.0, an integrative microRNA resource :: BLAST
>54636_sof-miR168a:pmrd
Length = 104
Score = 184 bits (93), Expect = 8e-48
Identities = 99/101 (98%)
Strand = Plus / Plus
Query: 2 ccgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacggga 61
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ccgccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacggga 61
Query: 62 cggatcccgccttgcatcaagtgaatcggagccggcgcagc 102
|||||||||||||||| ||||||||||||||||||||||||
Sbjct: 62 cggatcccgccttgcaccaagtgaatcggagccggcgcagc 102
>54999_zma-miR168a:pmrd
Length = 104
Score = 176 bits (89), Expect = 2e-45
Identities = 98/101 (97%)
Strand = Plus / Plus
Query: 4 gccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 63
Query: 64 gatcccgccttgcatcaagtgaatcggagccggcgcagcga 104
|||||||||||||| |||||||||||||||||||| |||||
Sbjct: 64 gatcccgccttgcaccaagtgaatcggagccggcggagcga 104
>54637_sof-miR168b:pmrd
Length = 103
Score = 155 bits (78), Expect = 8e-39
Identities = 95/98 (96%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 5 ccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacgg 64
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 6 ccgcgccgtct-gggctcgcttgg-gcagatcgggacccgccgcccggccgacgggacgg 63
Query: 65 atcccgccttgcatcaagtgaatcggagccggcgcagc 102
||||||||||||| ||||||||||||||||||||||||
Sbjct: 64 atcccgccttgcaccaagtgaatcggagccggcgcagc 101
>55002_zma-miR168m:pmrd
Length = 65
Score = 121 bits (61), Expect = 1e-28
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcatca 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
Query: 81 agtga 85
|||||
Sbjct: 61 agtga 65
>54655_ssp-miR168:pmrd
Length = 65
Score = 121 bits (61), Expect = 1e-28
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcatca 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgcccggccgacgggacggatcccgccttgcacca 60
Query: 81 agtga 85
|||||
Sbjct: 61 agtga 65
>54436_sbi-miR168:pmrd
Length = 106
Score = 111 bits (56), Expect = 1e-25
Identities = 92/103 (89%), Gaps = 2/103 (1%)
Strand = Plus / Plus
Query: 2 ccgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgg 59
||||||||||| ||||||||||||||||||||||||||||| |||||| | | |||||
Sbjct: 2 ccgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgg 61
Query: 60 gacggatcccgccttgcatcaagtgaatcggagccggcgcagc 102
||| |||||||||||||| |||||||||| ||||||| |||||
Sbjct: 62 gacagatcccgccttgcaccaagtgaatccgagccggagcagc 104
>48873_osa-miR168a:pmrd
Length = 87
Score = 95.6 bits (48), Expect = 6e-21
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 14 ctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgc 71
|||||||||||||||||||||||||||||||||||| | || | | ||| ||||||||||
Sbjct: 4 ctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgc 63
Query: 72 cttgcatcaagtgaatcggagccg 95
|||||| |||||||||||||||||
Sbjct: 64 cttgcaccaagtgaatcggagccg 87
>48872_osa-miR168a:pmrd
Length = 87
Score = 95.6 bits (48), Expect = 6e-21
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 14 ctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgc 71
|||||||||||||||||||||||||||||||||||| | || | | ||| ||||||||||
Sbjct: 4 ctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgc 63
Query: 72 cttgcatcaagtgaatcggagccg 95
|||||| |||||||||||||||||
Sbjct: 64 cttgcaccaagtgaatcggagccg 87
>48871_osa-miR168a:pmrd
Length = 87
Score = 95.6 bits (48), Expect = 6e-21
Identities = 77/84 (91%), Gaps = 2/84 (2%)
Strand = Plus / Plus
Query: 14 ctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgc 71
|||||||||||||||||||||||||||||||||||| | || | | ||| ||||||||||
Sbjct: 4 ctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgc 63
Query: 72 cttgcatcaagtgaatcggagccg 95
|||||| |||||||||||||||||
Sbjct: 64 cttgcaccaagtgaatcggagccg 87
>55001_zma-miR168c:pmrd
Length = 67
Score = 85.7 bits (43), Expect = 6e-18
Identities = 63/67 (94%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacccgccgcccggc-cgacgggacggatcccg-ccttgcat 78
||||||| |||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct: 1 tcgcttgttgcagatcgggacccgccgccccgcgcgacgggacggatcccgcccttgcat 60
Query: 79 caagtga 85
|||||||
Sbjct: 61 caagtga 67
>48661_hvv-miR168:pmrd
Length = 66
Score = 83.8 bits (42), Expect = 2e-17
Identities = 61/66 (92%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacccgccgcccg-gccgacgggacggatcccgccttgcatc 79
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||| |
Sbjct: 1 tcgcttggtgcagatcgggaccctccgcccgccccgacgggccggatcccgccttgcacc 60
Query: 80 aagtga 85
||||||
Sbjct: 61 aagtga 66
>48875_osa-miR168m:pmrd
Length = 67
Score = 61.9 bits (31), Expect = 8e-11
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 21 tcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacggatcccgccttgcat 78
||||||||||||||||||||||||||||| | || | | ||| ||||||||||||||||
Sbjct: 1 tcgcttggtgcagatcgggacccgccgccgccgctgccggggccggatcccgccttgcac 60
Query: 79 caagtga 85
|||||||
Sbjct: 61 caagtga 67
>54802_vvi-miR168:pmrd
Length = 132
Score = 52.0 bits (26), Expect = 8e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 64 gatcccgccttgcatcaagtgaatcggagccggc 97
|||||||||||||||||| |||||||||| ||||
Sbjct: 99 gatcccgccttgcatcaactgaatcggagacggc 132
>51651_ptc-miR168b:pmrd
Length = 136
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 106 ggatcccgccttgcatcaactgaatcggag 135
>51650_ptc-miR168a:pmrd
Length = 160
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 130 ggatcccgccttgcatcaactgaatcggag 159
>48560_gma-miR168:pmrd
Length = 125
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 84 ggatcccgccttgcatcaactgaatcggag 113
>47339_ath-miRf10239-akr:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcgga 91
||||||||||||||||||| |||||||||
Sbjct: 94 ggatcccgccttgcatcaactgaatcgga 122
>46957_ath-miR168a:pmrd
Length = 138
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcgga 91
||||||||||||||||||| |||||||||
Sbjct: 99 ggatcccgccttgcatcaactgaatcgga 127
>54388_rco-miR168:pmrd
Length = 156
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcg 89
||||||||||||||||||| |||||||
Sbjct: 115 ggatcccgccttgcatcaactgaatcg 141
>48349_bna-miR168:pmrd
Length = 133
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 62 cggatcccgccttgcatcaagtgaatc 88
|||||||||||||| ||||||||||||
Sbjct: 93 cggatcccgccttgtatcaagtgaatc 119
