miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 176 bits (89), Expect = 4e-44
Identities = 98/101 (97%)
Strand = Plus / Plus
Query: 4 gccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 63
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccggccgacgggacg 61
Query: 64 gatcccgccttgcatcaagtgaatcggagccggcgcagcga 104
|||||||||||||| |||||||||||||||||||| |||||
Sbjct: 62 gatcccgccttgcaccaagtgaatcggagccggcggagcga 102
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 109 bits (55), Expect = 7e-24
Identities = 91/102 (89%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 3 cgccgcgccgtctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacggg 60
|||||||||| ||||||||||||||||||||||||||||| |||||| | | ||||||
Sbjct: 1 cgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacggg 60
Query: 61 acggatcccgccttgcatcaagtgaatcggagccggcgcagc 102
|| |||||||||||||| |||||||||| ||||||| |||||
Sbjct: 61 acagatcccgccttgcaccaagtgaatccgagccggagcagc 102
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 107 bits (54), Expect = 3e-23
Identities = 89/98 (90%), Gaps = 2/98 (2%)
Strand = Plus / Plus
Query: 8 cgccgtctcgggctcgcttggtgcagatcgggacccgccgcc-cggccgac-gggacgga 65
||||| |||||||||||||||||||||||||||||||||||| | || | | ||| ||||
Sbjct: 6 cgccgcctcgggctcgcttggtgcagatcgggacccgccgccgccgctgccggggccgga 65
Query: 66 tcccgccttgcatcaagtgaatcggagccggcgcagcg 103
|||||||||||| |||||||||||||||||||| ||||
Sbjct: 66 tcccgccttgcaccaagtgaatcggagccggcgtagcg 103
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggagcc 94
||||||||||||||||||| ||||||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggagcc 94
||||||||||||||||||| ||||||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcggagcc 127
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggagcc 94
||||||||||||||||||| ||||||||||||
Sbjct: 97 ggatcccgccttgcatcaactgaatcggagcc 128
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggagcc 94
||||||||||||||||||| ||||||||||||
Sbjct: 94 ggatcccgccttgcatcaactgaatcggagcc 125
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 62 cggatcccgccttgcatcaagtgaatcggag 92
|||||||||||||||||||| ||||||||||
Sbjct: 94 cggatcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 64 gatcccgccttgcatcaagtgaatcggagccggcg 98
|||||||||||||||||| |||||||||| |||||
Sbjct: 107 gatcccgccttgcatcaactgaatcggagacggcg 141
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 35 ggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 94 ggatcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 138 ggatcccgccttgcatcaactgaatcggag 167
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 114 ggatcccgccttgcatcaactgaatcggag 143
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcggag 92
||||||||||||||||||| ||||||||||
Sbjct: 80 ggatcccgccttgcatcaactgaatcggag 109
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcgga 91
||||||||||||||||||| |||||||||
Sbjct: 96 ggatcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 66 tcccgccttgcatcaagtgaatcggagcc 94
|||||||||||||||| ||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggagcc 126
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcgga 91
||||||||||||||||||| |||||||||
Sbjct: 100 ggatcccgccttgcatcaactgaatcgga 128
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 66 tcccgccttgcatcaagtgaatcggagc 93
|||||||||||||||| |||||||||||
Sbjct: 96 tcccgccttgcatcaactgaatcggagc 123
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gatcccgccttgcatcaagtgaatcggagcc 94
|||||||||||||||||| |||||| |||||
Sbjct: 69 gatcccgccttgcatcaactgaatccgagcc 99
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 ggatcccgccttgcatcaagtgaatcg 89
||||||||||||||||||| |||||||
Sbjct: 115 ggatcccgccttgcatcaactgaatcg 141
