miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25762_xtr-mir-122:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Minus
Query: 5 gtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 gtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacact 10
Query: 65 ccatagctc 73
|||||||||
Sbjct: 9 ccatagctc 1
>25938_gga-mir-122-2:mirbase
Length = 77
Score = 101 bits (51), Expect = 7e-23
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 3 cagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcaca 62
|||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 73 cagtagctatttagtgtgataatggcgtttgatagattggacacaaacaccattgtcaca 14
Query: 63 ctccatagctc 73
|||||||||||
Sbjct: 13 ctccatagctc 3
>28426_hsa-mir-122:mirbase
Length = 85
Score = 95.6 bits (48), Expect = 4e-21
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 2 gcagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcac 61
||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 80 gcagtagctatttagtgtgataatggcgtttgatagtttagacacaaacaccattgtcac 21
Query: 62 actccatagctc 73
|||||| |||||
Sbjct: 20 actccacagctc 9
>30814_ppy-mir-122:mirbase
Length = 85
Score = 95.6 bits (48), Expect = 4e-21
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 2 gcagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcac 61
||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 80 gcagtagctatttagtgtgataatggcgtttgatagtttagacacaaacaccattgtcac 21
Query: 62 actccatagctc 73
|||||| |||||
Sbjct: 20 actccacagctc 9
>25937_gga-mir-122-1:mirbase
Length = 77
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 3 cagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcaca 62
|||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 73 cagtagctatttagtgtgataatggcgtttgatagattggacacaaacaccattgtcaca 14
Query: 63 ctccatagctc 73
||||| |||||
Sbjct: 13 ctccacagctc 3
>27371_mdo-mir-122:mirbase
Length = 74
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 3 cagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcaca 62
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 73 cagtagctatttagtgtgataatggcgtttgatagactggacacaaacaccattgtcaca 14
Query: 63 ctccatagctc 73
|||||||||||
Sbjct: 13 ctccatagctc 3
>29379_hsa-mir-3591:mirbase
Length = 73
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 3 cagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcaca 62
|||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1 cagtagctatttagtgtgataatggcgtttgatagtttagacacaaacaccattgtcaca 60
Query: 63 ctccatagctc 73
||||| |||||
Sbjct: 61 ctccacagctc 71
>29380_hsa-mir-3591:mirbase
Length = 73
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 3 cagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcaca 62
|||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1 cagtagctatttagtgtgataatggcgtttgatagtttagacacaaacaccattgtcaca 60
Query: 63 ctccatagctc 73
||||| |||||
Sbjct: 61 ctccacagctc 71
>33197_bta-mir-122:mirbase
Length = 85
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 3 cagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcaca 62
|||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 79 cagtagctatttagtgtgataatggcgtttgatagtttggacacaaacaccattgtcaca 20
Query: 63 ctccatagctc 73
||||| |||||
Sbjct: 19 ctccacagctc 9
>33967_ssc-mir-122:mirbase
Length = 85
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Minus
Query: 3 cagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcaca 62
|||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 79 cagtagctatttagtgtgataatggcgtttgatagtttggacacaaacaccattgtcaca 20
Query: 63 ctccatagctc 73
||||| |||||
Sbjct: 19 ctccacagctc 9
>27714_mml-mir-122a:mirbase
Length = 85
Score = 91.7 bits (46), Expect = 7e-20
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 4 agtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacac 63
||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 78 agtagctatttagtgtgataatggcgtttgatagtttagacacaaacaccattgtcacac 19
Query: 64 tccatagctc 73
|||| |||||
Sbjct: 18 tccacagctc 9
>27006_eca-mir-122:mirbase
Length = 66
Score = 87.7 bits (44), Expect = 1e-18
Identities = 56/60 (93%)
Strand = Plus / Minus
Query: 13 ttagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacactccatagct 72
||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct: 60 ttagtgtgataatggcgtttgatagtttggacacaaacaccattgtcacactccacagct 1
>30207_ptr-mir-122:mirbase
Length = 84
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 2 gcagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcac 61
||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 79 gcagtagctatttagtgtgataatggcgtttgataatttagacacaaacaccattgtcac 20
Query: 62 actccatagctc 73
|||||| |||||
Sbjct: 19 actccacagctc 8
>26685_cfa-mir-122:mirbase
Length = 58
Score = 85.7 bits (43), Expect = 4e-18
Identities = 52/55 (94%)
Strand = Plus / Minus
Query: 13 ttagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacactcca 67
||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 55 ttagtgtgataatggcgtttgatagtttggacacaaacaccattgtcacactcca 1
>31478_oan-mir-122:mirbase
Length = 111
Score = 85.7 bits (43), Expect = 4e-18
Identities = 64/71 (90%)
Strand = Plus / Minus
Query: 3 cagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcaca 62
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 93 cagtagctatttagtgtgataatggcgtttgatagactggacacaaacaccattgtcaca 34
Query: 63 ctccatagctc 73
||||| |||||
Sbjct: 33 ctccacagctc 23
>26449_tgu-mir-122:mirbase
Length = 72
Score = 81.8 bits (41), Expect = 6e-17
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 13 ttagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacactccatagct 72
||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||
Sbjct: 64 ttagtgtgataatggcgtttgatagatg-gacacaaacaccattgtcacactccacagct 6
Query: 73 c 73
|
Sbjct: 5 c 5
>31837_mmu-mir-122:mirbase
Length = 66
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Minus
Query: 13 ttagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacactccatagct 72
||||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||
Sbjct: 60 ttagtgtgataatggcgtttgatggtttggacacaaacaccattgtcacactccacagct 1
>32716_rno-mir-122:mirbase
Length = 85
Score = 71.9 bits (36), Expect = 6e-14
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 2 gcagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcac 61
||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct: 80 gcagtagctgtttagtgtgatgatggcgtttgatgttttggacacaaacaccattgtcac 21
Query: 62 actccatagctc 73
|||||| |||||
Sbjct: 20 actccagagctc 9
>33091_rno-mir-3591:mirbase
Length = 109
Score = 71.9 bits (36), Expect = 6e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 2 gcagtagctcattagtgtgataatggcgtttgatagctctgacacaaacaccattgtcac 61
||||||||| |||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct: 17 gcagtagctgtttagtgtgatgatggcgtttgatgttttggacacaaacaccattgtcac 76
Query: 62 actccatagctc 73
|||||| |||||
Sbjct: 77 actccagagctc 88
>34584_fru-mir-122:mirbase
Length = 66
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 13 ttagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacactccatagct 72
|||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct: 60 ttagtgtgataatggcgtttgaaagaaaggaaacaaacaccattgtcacactccatagct 1
>34731_tni-mir-122:mirbase
Length = 66
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 13 ttagtgtgataatggcgtttgatagctctgacacaaacaccattgtcacactccatagct 72
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||||
Sbjct: 60 ttagtgtgataatggcgtttgaaagaaaggacacaaacaccattgtcacactccacagct 1
>34270_dre-mir-122:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 6e-08
Identities = 54/62 (87%), Gaps = 1/62 (1%)
Strand = Plus / Minus
Query: 13 ttagtgtgataatggcgtttgatagctc-tgacacaaacaccattgtcacactccatagc 71
|||||||||||||||||||||| | ||| ||||||||||||||||||||||| |||
Sbjct: 66 ttagtgtgataatggcgtttgacgacagatgatacaaacaccattgtcacactccacagc 7
Query: 72 tc 73
||
Sbjct: 6 tc 5
