miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 204 bits (103), Expect = 2e-52
Identities = 112/115 (97%)
Strand = Plus / Plus
Query: 1 gcgatgttggcatggctcaatcaactcgccggccgcgggtggcttagcttattaattctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gcgatgttggcatggctcaatcaactcgccggccgcgggtggcttagcttattaattctg 68
Query: 61 cgcgttcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatc 115
|| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 cgtttttgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatc 123
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 174 bits (88), Expect = 2e-43
Identities = 111/117 (94%), Gaps = 5/117 (4%)
Strand = Plus / Plus
Query: 1 gcgatgttggcatggctcaatcaactcgccggccgcgggtggct--tagcttattaattc 58
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 9 gcgatgttggcatggctcaatcaactcgccggccgcgggtggcttatagc---ttaattc 65
Query: 59 tgcgcgttcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatc 115
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 tgcgcattcgatcgaggtgcgggcgcagtgtttaattgattgagccgtgccaatatc 122
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 gtttaattgattgagccgtgccaatatc 115
||||| ||||||||||||||||||||||
Sbjct: 62 gtttatttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 71 ttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 110 ttgattgagccgtgccaatatc 131
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 89 ttgattgagccgtgccaatatc 110
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 59 ttgattgagccgtgccaatatc 80
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 105 ttgattgagccgtgccaatatc 126
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 92 ttgattgagccgtgccaatatc 113
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 66 ttgattgagccgtgccaatatc 87
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 84 ttgattgagccgtgccaatatc 105
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 71 ttgattgagccgtgccaatatc 92
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 81 ttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 67 ttgattgagccgtgccaatatc 88
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 111 ttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 81 ttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 69 ttgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 85 ttgattgagccgtgccaatatc 106
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 68 ttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 65 ttgattgagccgtgccaatatc 86
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 68 ttgattgagccgtgccaatatc 89
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 111 ttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 69 ttgattgagccgtgccaatatc 90
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa Japonica
Group
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 94 ttgattgagccgtgccaatatc 115
||||||||||||||||||||||
Sbjct: 68 ttgattgagccgtgccaatatc 89
