miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>51342_ppd-miR170:pmrd
          Length = 297

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 35  gagccggtgattgagccgcgccaatatc 62
           |||| |||||||||||||||||||||||
Sbjct: 270 gagctggtgattgagccgcgccaatatc 297




>48484_gcl-miR171:pmrd
          Length = 205

 Score = 48.1 bits (24), Expect = 7e-07
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 35  gagccggtgattgagccgcgccaatatc 62
           |||| |||||||||||||||||||||||
Sbjct: 178 gagctggtgattgagccgcgccaatatc 205




>54451_sbi-miR170:pmrd
          Length = 55

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 ggtgattgagccgcgccaatatc 62
          |||||||||||||||||||||||
Sbjct: 33 ggtgattgagccgcgccaatatc 55




>48569_gma-miR171m:pmrd
          Length = 172

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ggtgattgagccgcgccaatatc 62
           |||||||||||||||||||||||
Sbjct: 150 ggtgattgagccgcgccaatatc 172




>48313_bdi-miR171d:pmrd
          Length = 107

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ggtgattgagccgcgccaatatc 62
           |||||||||||||||||||||||
Sbjct: 79  ggtgattgagccgcgccaatatc 101




>48311_bdi-miR171a:pmrd
          Length = 120

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 40 ggtgattgagccgcgccaatatc 62
          |||||||||||||||||||||||
Sbjct: 48 ggtgattgagccgcgccaatatc 70




>46976_ath-miR170n:pmrd
          Length = 172

 Score = 46.1 bits (23), Expect = 3e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 40  ggtgattgagccgcgccaatatc 62
           |||||||||||||||||||||||
Sbjct: 150 ggtgattgagccgcgccaatatc 172




>46982_ath-miR171o:pmrd
          Length = 339

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 41  gtgattgagccgcgccaatatc 62
           ||||||||||||||||||||||
Sbjct: 318 gtgattgagccgcgccaatatc 339




>55028_zma-miR171a:pmrd
          Length = 99

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 79 tgattgagccgcgccaatatc 99




>54832_vvi-miR171e:pmrd
          Length = 103

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 70 tgattgagccgcgccaatatc 90




>54667_stu-miR171:pmrd
          Length = 124

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 1  tgattgagccgcgccaatatc 21




>54666_stu-miR170:pmrd
          Length = 124

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 1  tgattgagccgcgccaatatc 21




>54553_sly-miR171c:pmrd
          Length = 121

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98




>54461_sbi-miR171j:pmrd
          Length = 108

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  tgattgagccgcgccaatatc 62
           |||||||||||||||||||||
Sbjct: 83  tgattgagccgcgccaatatc 103




>54458_sbi-miR171g:pmrd
          Length = 77

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 57 tgattgagccgcgccaatatc 77




>48895_osa-miR171a:pmrd
          Length = 96

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 67 tgattgagccgcgccaatatc 87




>48636_gra-miR171:pmrd
          Length = 117

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 1  tgattgagccgcgccaatatc 21




>48407_bra-miR171e:pmrd
          Length = 119

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  tgattgagccgcgccaatatc 62
           |||||||||||||||||||||
Sbjct: 84  tgattgagccgcgccaatatc 104




>48369_bna-miR171g:pmrd
          Length = 115

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98




>48368_bna-miR171f:pmrd
          Length = 119

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  tgattgagccgcgccaatatc 62
           |||||||||||||||||||||
Sbjct: 84  tgattgagccgcgccaatatc 104




>46981_ath-miR171n:pmrd
          Length = 461

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 1  tgattgagccgcgccaatatc 21




>46980_ath-miR171m:pmrd
          Length = 92

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92




>46977_ath-miR171a:pmrd
          Length = 123

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  tgattgagccgcgccaatatc 62
           |||||||||||||||||||||
Sbjct: 88  tgattgagccgcgccaatatc 108




>46975_ath-miR170m:pmrd
          Length = 92

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 72 tgattgagccgcgccaatatc 92




>46853_ace-miR171c:pmrd
          Length = 216

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  tgattgagccgcgccaatatc 62
           |||||||||||||||||||||
Sbjct: 196 tgattgagccgcgccaatatc 216




>46852_ace-miR171b:pmrd
          Length = 215

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  tgattgagccgcgccaatatc 62
           |||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215




>46851_ace-miR171a:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 1  tgattgagccgcgccaatatc 21




>46850_ace-miR170d:pmrd
          Length = 215

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 42  tgattgagccgcgccaatatc 62
           |||||||||||||||||||||
Sbjct: 195 tgattgagccgcgccaatatc 215




>46849_ace-miR170c:pmrd
          Length = 55

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 1  tgattgagccgcgccaatatc 21




>46848_ace-miR170b:pmrd
          Length = 76

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 56 tgattgagccgcgccaatatc 76




>46847_ace-miR170a:pmrd
          Length = 89

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 42 tgattgagccgcgccaatatc 62
          |||||||||||||||||||||
Sbjct: 1  tgattgagccgcgccaatatc 21




>54910_zel-miR171:pmrd
          Length = 65

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 2  gattgagccgcgccaatatc 21




>54833_vvi-miR171f:pmrd
          Length = 103

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatc 90




>54554_sly-miR171d:pmrd
          Length = 112

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92




>52488_ptc-miRf10666-akr:pmrd
          Length = 93

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 68 gattgagccgcgccaatatc 87




>52331_ptc-miRf10509-akr:pmrd
          Length = 99

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92




>51694_ptc-miR171k:pmrd
          Length = 78

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78




>51687_ptc-miR171d:pmrd
          Length = 100

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatc 91




>51686_ptc-miR171c:pmrd
          Length = 104

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatc 95




>51383_ppt-miR171b:pmrd
          Length = 92

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84




>51382_ppt-miR171a:pmrd
          Length = 91

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatc 83




>48497_ghr-miR171:pmrd
          Length = 85

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 43 gattgagccgcgccaatatc 62
          ||||||||||||||||||||
Sbjct: 66 gattgagccgcgccaatatc 85




>54639_sof-miR171a:pmrd
          Length = 375

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 44  attgagccgcgccaatatc 62
           |||||||||||||||||||
Sbjct: 357 attgagccgcgccaatatc 375




>54582_smo-miR171d:pmrd
          Length = 103

 Score = 38.2 bits (19), Expect = 6e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 44 attgagccgcgccaatatc 62
          |||||||||||||||||||
Sbjct: 71 attgagccgcgccaatatc 89