miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42761_zma-MIR171a:mirbase
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 gatattggcgaggttcaatcagatgatgtatttttcttatatataaatttgcatgcatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatattggcgaggttcaatcagatgatgtatttttcttatatataaatttgcatgcatga 60
Query: 61 aggtgtgaatccagtgtctgattgagccgcgccaatatc 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtgtgaatccagtgtctgattgagccgcgccaatatc 99
>42774_zma-MIR171n:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 cagtgtctgattgagccgcgccaatatc 99
|||| |||||||||||||||||||||||
Sbjct: 50 cagtatctgattgagccgcgccaatatc 77
>42555_sbi-MIR171j:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 44 taaatttgcatgcatgaaggtgtgaatccagtgtctgattgagccgcgccaatatc 99
||||||| |||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 48 taaatttacatgcatgaaggtgaatccccagggactgattgagccgcgccaatatc 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gatattggcgaggttcaatcagat 24
|||||||| |||||||||||||||
Sbjct: 7 gatattggtgaggttcaatcagat 30
>42552_sbi-MIR171g:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 cagtgtctgattgagccgcgccaatatc 99
|||| |||||||||||||||||||||||
Sbjct: 50 cagtatctgattgagccgcgccaatatc 77
>41981_osa-MIR171a:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 cagtgtctgattgagccgcgccaatatc 99
|||| |||||||||||||||||||||||
Sbjct: 60 cagtatctgattgagccgcgccaatatc 87
>41626_vvi-MIR171e:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgcgccaatatc 90
>40322_bra-MIR171e:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 82 tctgattgagccgcgccaatatc 104
>40291_bna-MIR171g:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 56 tctgattgagccgcgccaatatc 78
>40290_bna-MIR171f:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 82 tctgattgagccgcgccaatatc 104
>40060_ath-MIR171a:mirbase
Length = 123
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 86 tctgattgagccgcgccaatatc 108
>39849_aly-MIR171a:mirbase
Length = 198
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 128 tctgattgagccgcgccaatatc 150
>41764_bdi-MIR171a:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tgattgagccgcgccaatatc 99
|||||||||||||||||||||
Sbjct: 50 tgattgagccgcgccaatatc 70
>41540_sly-MIR171c:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tgattgagccgcgccaatatc 99
|||||||||||||||||||||
Sbjct: 78 tgattgagccgcgccaatatc 98
>41231_csi-MIR171a:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tgattgagccgcgccaatatc 99
|||||||||||||||||||||
Sbjct: 67 tgattgagccgcgccaatatc 87
>41211_ccl-MIR171:mirbase
Length = 321
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tgattgagccgcgccaatatc 99
|||||||||||||||||||||
Sbjct: 122 tgattgagccgcgccaatatc 142
>41116_tcc-MIR171a:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 79 tgattgagccgcgccaatatc 99
|||||||||||||||||||||
Sbjct: 79 tgattgagccgcgccaatatc 99
>41986_osa-MIR171f:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 gtctgattgagccgcgccaatatc 99
|||||||||||||| |||||||||
Sbjct: 94 gtctgattgagccgtgccaatatc 117
>41627_vvi-MIR171f:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatc 90
>41541_sly-MIR171d:mirbase
Length = 112
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 73 gattgagccgcgccaatatc 92
>41391_ptc-MIR171k:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 59 gattgagccgcgccaatatc 78
>41384_ptc-MIR171d:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 72 gattgagccgcgccaatatc 91
>41383_ptc-MIR171c:mirbase
Length = 104
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 76 gattgagccgcgccaatatc 95
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 gtctgattgagccgcgccaatatc 99
|||||||||||||| |||||||||
Sbjct: 92 gtctgattgagccgtgccaatatc 115
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 76 gtctgattgagccgcgccaatatc 99
|||||||||||||| |||||||||
Sbjct: 72 gtctgattgagccgtgccaatatc 95
>41118_tcc-MIR171c:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 84 gattgagccgcgccaatatc 103
>41117_tcc-MIR171b:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 81 gattgagccgcgccaatatc 100
>40699_mtr-MIR171e:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 69 gattgagccgcgccaatatc 88
>40365_rco-MIR171g:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>39479_ppt-MIR171b:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 65 gattgagccgcgccaatatc 84
>39478_ppt-MIR171a:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 80 gattgagccgcgccaatatc 99
||||||||||||||||||||
Sbjct: 64 gattgagccgcgccaatatc 83
