miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 44 taaatttgcatgcatgaaggtgtgaatccagtgtctgattgagccgcgccaatatc 99
||||||| |||||||||||||| |||| | ||||||||||||||||||||||
Sbjct: 52 taaatttacatgcatgaaggtgaatccccagggactgattgagccgcgccaatatc 107
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 cagtgtctgattgagccgcgccaatatc 99
|||| |||||||||||||||||||||||
Sbjct: 61 cagtatctgattgagccgcgccaatatc 88
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 75 tctgattgagccgcgccaatatc 97
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 80 tctgattgagccgcgccaatatc 102
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 68 tctgattgagccgcgccaatatc 90
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tctgattgagccgcgccaatatc 99
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgcgccaatatc 89
