miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 137 bits (69), Expect = 3e-32
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 1 cgggatattggcgcggttcaatcagaaagcttgcgctccaggcccgaggggctccactct 60
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 8 cgggatattggcgcggttcaatcagaaagcttgcgctccaaagcccaggggctccactct 67
Query: 61 ttgattgagccgtgccaatatcacg 85
|||||||||||||||||||||||||
Sbjct: 68 ttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 113 bits (57), Expect = 4e-25
Identities = 78/85 (91%)
Strand = Plus / Plus
Query: 1 cgggatattggcgcggttcaatcagaaagcttgcgctccaggcccgaggggctccactct 60
||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 8 cgggatattggtgcggttcaatcagaaagcttgtgctccgaaggcgaggggctccactct 67
Query: 61 ttgattgagccgtgccaatatcacg 85
|||||||||||||||||||||||||
Sbjct: 68 ttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 91.7 bits (46), Expect = 1e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 cgggatattggcgcggttcaatcagaaagcttgcgctccaggcccgaggggctccactc- 59
||||||||||| ||||||||||||||||||||| ||||| | ||||| |||| ||||
Sbjct: 8 cgggatattggggcggttcaatcagaaagcttgtgctccggaagcgaggagctctactct 67
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcacg 93
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacg 95
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacg 90
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacg 90
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacg 95
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacg 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cgggatattggcgcggttcaatcagaaagc 30
||||||||||| |||||||||| |||||||
Sbjct: 8 cgggatattggtgcggttcaataagaaagc 37
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||||||||||||||||
Sbjct: 64 tttgattgagccgtgccaatatcacg 89
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 48 ggggctccactctttgattgagccgtgccaatatcacg 85
||||||| |||| ||||||||||||||||||||||||
Sbjct: 66 ggggctctgctctctgattgagccgtgccaatatcacg 103
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 48 ggggctccactctttgattgagccgtgccaatatcacg 85
||||||| |||| ||||||||||||||||||||||||
Sbjct: 69 ggggctctgctctctgattgagccgtgccaatatcacg 106
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcac 84
|||||||||||||||||||||||||
Sbjct: 58 tttgattgagccgtgccaatatcac 82
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcac 84
|||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcac 92
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcac 84
|||||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatcac 134
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 ctttgattgagccgtgccaatatc 82
||||||||||||||||||||||||
Sbjct: 103 ctttgattgagccgtgccaatatc 126
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 59 ctttgattgagccgtgccaatatc 82
||||||||||||||||||||||||
Sbjct: 99 ctttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 ttgattgagccgtgccaatatcac 84
||||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatcac 124
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 ttgattgagccgtgccaatatcac 84
||||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatcac 125
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131
>RF00643;MIR171_1;FM163807.1/196-297 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 gattgagccgtgccaatatcacg 85
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 88 tttgattgagccgtgccaatatc 110
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tgattgagccgtgccaatatcac 84
|||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatcac 85
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 91 tttgattgagccgtgccaatatc 113
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatatc 105
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 110 tttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatc 82
|||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatatc 106
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 tgattgagccgtgccaatatcac 84
|||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatcac 119
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgattgagccgtgccaatatca 83
||||||||||||||||||||||
Sbjct: 83 tgattgagccgtgccaatatca 104
>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatat 81
||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatat 104
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgattgagccgtgccaatatca 83
||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatca 91
>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 attgagccgtgccaatatcacg 85
||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacg 91
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 60 tttgattgagccgtgccaatatcacg 85
||||||||||||| ||||||||||||
Sbjct: 67 tttgattgagccgcgccaatatcacg 92
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgattgagccgtgccaatatca 83
||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatca 88
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 tgattgagccgtgccaatatca 83
||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatca 86
