miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 184 bits (93), Expect = 2e-46
Identities = 99/101 (98%)
Strand = Plus / Plus
Query: 11 aaacctacgggatattggtgcggttcaatcagaaagcttgcgctccaaagcccaggggct 70
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaacctacgggatattggcgcggttcaatcagaaagcttgcgctccaaagcccaggggct 60
Query: 71 ccactctttgactgagccgtgccaatatcacgtcctcgctt 111
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 61 ccactctttgattgagccgtgccaatatcacgtcctcgctt 101
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa Japonica
Group
Length = 101
Score = 135 bits (68), Expect = 1e-31
Identities = 83/88 (94%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaagcttgcgctccaaagcccaggggctccactc 76
|||||||||||||||||||||||||||||||||| ||||| ||| | |||||||||||||
Sbjct: 7 acgggatattggtgcggttcaatcagaaagcttgtgctccgaaggcgaggggctccactc 66
Query: 77 tttgactgagccgtgccaatatcacgtc 104
||||| ||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgtc 94
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 81.8 bits (41), Expect = 2e-15
Identities = 78/89 (87%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaagcttgcgctccaaagcccaggggctccactc 76
|||||||||||| ||||||||||||||||||||| ||||| | | ||| |||| ||||
Sbjct: 7 acgggatattggggcggttcaatcagaaagcttgtgctccggaagcgaggagctctactc 66
Query: 77 -tttgactgagccgtgccaatatcacgtc 104
||||| ||||||||||||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatcacgtc 95
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 16 tacgggatattggtgcggttcaatcagaaagc 47
|||||||||||||||||||||||| |||||||
Sbjct: 6 tacgggatattggtgcggttcaataagaaagc 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacgt 93
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 tacgggatattggtgcggttcaatcagaaa 45
|||| |||||||||||||||||||||||||
Sbjct: 6 tacgagatattggtgcggttcaatcagaaa 35
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacg 102
||||| ||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatcacg 92
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgtcct 106
||||| ||||||||||||||||||||||||
Sbjct: 64 tttgattgagccgtgccaatatcacgtcct 93
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 65 ggggctccactctttgactgagccgtgccaatatcacgtcc 105
||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 66 ggggctctgctctctgattgagccgtgccaatatcacgtcc 106
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 65 ggggctccactctttgactgagccgtgccaatatcacgtcc 105
||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 69 ggggctctgctctctgattgagccgtgccaatatcacgtcc 109
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 tacgggatattggtgcggttcaatcaga 43
|||| |||||||||||||||||||||||
Sbjct: 6 tacgagatattggtgcggttcaatcaga 33
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaa 44
||||||||||||||||||||||||
Sbjct: 11 gatattggtgcggttcaatcagaa 34
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatcacgt 96
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatcacgt 91
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcaga 43
|||||||||||||||||||||||
Sbjct: 3 gatattggtgcggttcaatcaga 25
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 17 acgggatattggtgcggttcaatcagaaagc 47
||||||||||||| ||||||||| |||||||
Sbjct: 7 acgggatattggtccggttcaataagaaagc 37
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 tttgactgagccgtgccaatatcacgt 103
||||| |||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatcacgt 92
>RF00643;MIR171_1;AC215407.2/42962-42863 4081:Solanum lycopersicum
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaaagc 47
||||||||||||||||||| |||||||
Sbjct: 11 gatattggtgcggttcaattagaaagc 37
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 gatattggtgcggttcaatcagaaagc 47
||||||||||||||||||| |||||||
Sbjct: 11 gatattggtgcggttcaatgagaaagc 37
