miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;ABXC01000992.1/144178-144070 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 131 bits (66), Expect = 2e-30
Identities = 101/112 (90%), Gaps = 3/112 (2%)
Strand = Plus / Plus
Query: 1 agaacgaggcgacatggcatggtattgacttggctcatctctcgcccacaccagaatcca 60
|||||||| |||||||||||||||||||||||||||||||||| ||||| || | | ||
Sbjct: 1 agaacgagacgacatggcatggtattgacttggctcatctctcatccacagcaaacttca 60
Query: 61 caagtgccggaggaggtgagccgagccaatatcacttcatgtcatctagcgt 112
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagtgcc---tgaggtgagccgagccaatatcacttcatgtcatctagcgt 109
>RF00692;MIR171_2;AACV01016047.1/2719-2826 39947:Oryza sativa
Japonica Group
Length = 108
Score = 63.9 bits (32), Expect = 4e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 72 ggaggtgagccgagccaatatcacttcatgtc 103
||||||||||||||||||||||||||||||||
Sbjct: 68 ggaggtgagccgagccaatatcacttcatgtc 99
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 gacatggcatggtattgacttggctcatctc 41
|||||||||||||||||||||||||||||||
Sbjct: 11 gacatggcatggtattgacttggctcatctc 41
