miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;ABXC01004402.1/43379-43494 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 145 bits (73), Expect = 2e-34
Identities = 108/117 (92%), Gaps = 2/117 (1%)
Strand = Plus / Plus
Query: 5 ggaaggagacgacatggcgtggtattgtttcggctcatgtccttcttcgatcgagtcttg 64
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct: 1 ggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgcttcgagtct-g 59
Query: 65 ccgttggattt-ggatgtgatgtgagccgaaccaatatcactcatgtactcttcatt 120
||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 60 tcgtcggattttggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 116
>RF00692;MIR171_2;AACV01010311.1/27668-27580 39947:Oryza sativa
Japonica Group
Length = 89
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 82 gatgtgagccgaaccaatatcactcatgtactcttcatt 120
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 51 gatgtgagccgaaccaatatcactcatgtattcttcatt 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 6 gaaggagacgacatggcgtggtattgtttcggctcatgtc 45
|||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 2 gaagaagaggacatggtttggtattgtttcggctcatgtc 41
>RF00692;MIR171_2;ABXC01002937.1/36819-36709 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 86 tgagccgaaccaatatcactcatgtactcttcatt 120
|||||||||||||||||||||||||| ||||||||
Sbjct: 77 tgagccgaaccaatatcactcatgtattcttcatt 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 agacgacatggcgtggtattgtttcggctcatg 43
||||||||||||||| | |||||||||||||||
Sbjct: 7 agacgacatggcgtgatgttgtttcggctcatg 39
>RF00692;MIR171_2;AARH01005111.1/21886-21779 3694:Populus
trichocarpa
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 87 gagccgaaccaatatcactcatgtactcttcatt 120
|||||||| ||||||||||| ||||| |||||||
Sbjct: 75 gagccgaatcaatatcactcttgtacgcttcatt 108
