miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42770_zma-MIR171j:mirbase
Length = 129
Score = 214 bits (108), Expect = 1e-56
Identities = 122/129 (94%)
Strand = Plus / Plus
Query: 1 aatggccgcgagctagacggggtattgacgcggttcaattcgagagctcgagccctagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatggccgcgagctagacggggtattgacgcggttcaattcgagagctcgagccctagca 60
Query: 61 gaggccannnnnnntggggctctgctctctgattgagccgtgccaatatcacgtcccact 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaggccagggggggtggggctctgctctctgattgagccgtgccaatatcacgtcccact 120
Query: 121 cgccctcgc 129
|||||||||
Sbjct: 121 cgccctcgc 129
>42547_sbi-MIR171b:mirbase
Length = 132
Score = 97.6 bits (49), Expect = 2e-21
Identities = 91/105 (86%), Gaps = 3/105 (2%)
Strand = Plus / Plus
Query: 16 gacggggtattgacgcggttcaattcgagagctcgagccctagc--agaggccannnnnn 73
|||||||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct: 16 gacggggtattggcgcggttcaattcgagagctcgagccctagactagacgccagggaga 75
Query: 74 ntgggg-ctctgctctctgattgagccgtgccaatatcacgtccc 117
|||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 76 gagggggctctgctctctgattgagccgtgccaatatcacgtccc 120
>41216_crt-MIR171:mirbase
Length = 201
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgtcccactcgc 123
||||||||||||||||||||||||| ||||||||
Sbjct: 161 tgattgagccgtgccaatatcacgtgccactcgc 194
>42556_sbi-MIR171k:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 76 ggggctctgctctctgattgagccgtgccaatatcacgtc 115
||||||| |||| ||||||||||||||||||||||||||
Sbjct: 48 ggggctccactctttgattgagccgtgccaatatcacgtc 87
>41983_osa-MIR171c:mirbase
Length = 99
Score = 56.0 bits (28), Expect = 7e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 76 ggggctctgctctctgattgagccgtgccaatatcacgtc 115
||||||| |||| ||||||||||||||||||||||||||
Sbjct: 55 ggggctccactctttgattgagccgtgccaatatcacgtc 94
>41625_vvi-MIR171d:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgtcc 116
|||||||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcacgtcc 93
>42762_zma-MIR171b:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 76 ggggctctgctctctgattgagccgtgccaatatcacg 113
||||||| |||| ||||||||||||||||||||||||
Sbjct: 48 ggggctccactctttgattgagccgtgccaatatcacg 85
>41982_osa-MIR171b:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgtc 115
||||||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcacgtc 95
>41211_ccl-MIR171:mirbase
Length = 321
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgtcccactcgc 123
||||||||||| ||||||||||||| ||||||||
Sbjct: 122 tgattgagccgcgccaatatcacgtgccactcgc 155
>40359_rco-MIR171a:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 77 gggctctgctctctgattgagccgtgccaatatcacgt 114
|||| ||||| | |||||||||||||||||||||||||
Sbjct: 51 gggccctgctttttgattgagccgtgccaatatcacgt 88
>42763_zma-MIR171c:mirbase
Length = 118
Score = 50.1 bits (25), Expect = 4e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 76 ggggctctgctctctgattgagccgtgccaatatcacgtcc 116
||||||| |||| ||| |||||||||||||||||||||||
Sbjct: 65 ggggctccactctttgactgagccgtgccaatatcacgtcc 105
>41986_osa-MIR171f:mirbase
Length = 127
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatcac 112
|||||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatcac 119
>41624_vvi-MIR171c:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgt 114
|||||||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatcacgt 94
>41388_ptc-MIR171h:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatcac 112
|||||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatcac 93
>41387_ptc-MIR171g:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatcac 112
|||||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatcac 93
>41386_ptc-MIR171f:mirbase
Length = 130
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 86 tctctgattgagccgtgccaatatc 110
|||||||||||||||||||||||||
Sbjct: 97 tctctgattgagccgtgccaatatc 121
>41382_ptc-MIR171b:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgt 114
|||||||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatcacgt 95
>41381_ptc-MIR171a:mirbase
Length = 104
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgt 114
|||||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcacgt 96
>41178_aqc-MIR171b:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatcac 112
|||||||||||||||||||||||||
Sbjct: 53 tctgattgagccgtgccaatatcac 77
>41122_tcc-MIR171g:mirbase
Length = 115
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatcac 112
|||||||||||||||||||||||||
Sbjct: 73 tctgattgagccgtgccaatatcac 97
>41121_tcc-MIR171f:mirbase
Length = 117
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgt 114
|||||||||||||||||||||||||
Sbjct: 77 tgattgagccgtgccaatatcacgt 101
>41119_tcc-MIR171d:mirbase
Length = 117
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgt 114
|||||||||||||||||||||||||
Sbjct: 77 tgattgagccgtgccaatatcacgt 101
>40700_mtr-MIR171f:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgt 114
|||||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcacgt 91
>40360_rco-MIR171b:mirbase
Length = 91
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgt 114
|||||||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatcacgt 87
>39851_aly-MIR171c:mirbase
Length = 111
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgt 114
|||||||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatcacgt 98
>42640_tae-MIR171a:mirbase
Length = 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 ctctgattgagccgtgccaatatc 110
||||||||||||||||||||||||
Sbjct: 86 ctctgattgagccgtgccaatatc 109
>41766_bdi-MIR171c:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 85 ctctctgattgagccgtgccaatatcac 112
|||| |||||||||||||||||||||||
Sbjct: 59 ctctttgattgagccgtgccaatatcac 86
>41630_vvi-MIR171i:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatca 111
||||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatca 90
>41622_vvi-MIR171a:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatca 111
||||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatca 89
>40318_bra-MIR171a:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacg 113
||||||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatcacg 85
>40305_bol-MIR171a:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacg 113
||||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcacg 91
>40289_bna-MIR171e:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacg 113
||||||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatcacg 90
>40288_bna-MIR171d:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacg 113
||||||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatcacg 91
>40062_ath-MIR171c:mirbase
Length = 116
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacg 113
||||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatcacg 110
>42769_zma-MIR171i:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcac 112
|||||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatcac 87
>42766_zma-MIR171f:mirbase
Length = 155
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcac 112
|||||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatcac 137
>42765_zma-MIR171e:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>42764_zma-MIR171d:mirbase
Length = 121
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 80 tctgattgagccgtgccaatatc 102
>42641_tae-MIR171b:mirbase
Length = 138
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 90 gattgagccgtgccaatatcacg 112
>42554_sbi-MIR171i:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>42549_sbi-MIR171d:mirbase
Length = 153
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 112 tctgattgagccgtgccaatatc 134
>42546_sbi-MIR171a:mirbase
Length = 161
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcac 112
|||||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatcac 144
>41985_osa-MIR171e:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 87 tctgattgagccgtgccaatatc 109
>41984_osa-MIR171d:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 103 tctgattgagccgtgccaatatc 125
>41890_hvu-MIR171:mirbase
Length = 173
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 110 tctgattgagccgtgccaatatc 132
>41874_far-MIR171:mirbase
Length = 130
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatc 110
>41765_bdi-MIR171b:mirbase
Length = 164
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 112 tctgattgagccgtgccaatatc 134
>41626_vvi-MIR171e:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 86 tctctgattgagccgtgccaatatcac 112
||||||||||||||| |||||||||||
Sbjct: 66 tctctgattgagccgcgccaatatcac 92
>41539_sly-MIR171b:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 attgagccgtgccaatatcacgt 114
|||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacgt 86
>41385_ptc-MIR171e:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>41231_csi-MIR171a:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcacgtcccact 120
||||||||||| ||||||||||||| |||||
Sbjct: 67 tgattgagccgcgccaatatcacgtgccact 97
>41182_aqc-MIR171f:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 92 attgagccgtgccaatatcacgt 114
|||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacgt 86
>41123_tcc-MIR171h:mirbase
Length = 135
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatatc 115
>40457_gma-MIR171c:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 tgattgagccgtgccaatatcac 112
|||||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatcac 94
>40363_rco-MIR171e:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 57 tctgattgagccgtgccaatatc 79
>40361_rco-MIR171c:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 88 tctgattgagccgtgccaatatc 110
|||||||||||||||||||||||
Sbjct: 60 tctgattgagccgtgccaatatc 82
>40321_bra-MIR171d:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>40320_bra-MIR171c:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87
>40319_bra-MIR171b:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcacg 94
>40287_bna-MIR171c:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatcacg 87
>40286_bna-MIR171b:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatcacg 93
>40285_bna-MIR171a:mirbase
Length = 104
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatcacg 94
>40061_ath-MIR171b:mirbase
Length = 117
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatcacg 98
>39850_aly-MIR171b:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcacg 113
|||||||||||||||||||||||
Sbjct: 87 gattgagccgtgccaatatcacg 109
>40454_gma-MIR171a:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 attgagccgtgccaatatcacg 113
||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacg 91
>39736_smo-MIR171a:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 gattgagccgtgccaatatcac 112
||||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatcac 124
