miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;ABXC01004402.1/43379-43494 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 95.6 bits (48), Expect = 1e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 5 ggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttg 52
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttg 48
Score = 91.7 bits (46), Expect = 2e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 55 tggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 100
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 tggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 116
>RF00692;MIR171_2;AACV01010311.1/27668-27580 39947:Oryza sativa
Japonica Group
Length = 89
Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 62 gatgtgagccgaaccaatatcactcatgtattcttcatt 100
|||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gatgtgagccgaaccaatatcactcatgtattcttcatt 89
>RF00692;MIR171_2;ABXC01002937.1/36819-36709 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 69.9 bits (35), Expect = 6e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 66 tgagccgaaccaatatcactcatgtattcttcatt 100
|||||||||||||||||||||||||||||||||||
Sbjct: 77 tgagccgaaccaatatcactcatgtattcttcatt 111
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 aagacgacatggcgtggtattgtttcggctcatg 43
|||||||||||||||| | |||||||||||||||
Sbjct: 6 aagacgacatggcgtgatgttgtttcggctcatg 39
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 67 gagccgaaccaatatcactcatgtattcttc 97
|||||||||||||||||||| ||||| ||||
Sbjct: 71 gagccgaaccaatatcactcttgtatgcttc 101
