miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42780_zma-MIR319a:mirbase
Length = 209
Score = 414 bits (209), Expect = e-116
Identities = 209/209 (100%)
Strand = Plus / Plus
Query: 1 ggttcatgttttctctggaagagagctctcttcagtccactctgaaatggctgtagggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttcatgttttctctggaagagagctctcttcagtccactctgaaatggctgtagggtt 60
Query: 61 tcattagctgccgactcatccattcacctgccaagaaccatggacaggtctggtcttggt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcattagctgccgactcatccattcacctgccaagaaccatggacaggtctggtcttggt 120
Query: 121 agccgagtgggtggcgcgggagctaaaatcaagctctacgctgtttgtggttggactgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agccgagtgggtggcgcgggagctaaaatcaagctctacgctgtttgtggttggactgaa 180
Query: 181 gggtgctcccttttgtttgctcaaacgct 209
|||||||||||||||||||||||||||||
Sbjct: 181 gggtgctcccttttgtttgctcaaacgct 209
>42782_zma-MIR319c:mirbase
Length = 216
Score = 276 bits (139), Expect = 6e-75
Identities = 176/189 (93%), Gaps = 7/189 (3%)
Strand = Plus / Plus
Query: 11 ttctctggaagagagctctcttcagtccactctgaaatggctgtagggtttcattagctg 70
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11 ttctgtggaagagagctctcttcagtccactctaaaatggctgtagggtttcattagctg 70
Query: 71 ccgactcatccattcacctgccaagaaccatggac-------aggtctggtcttggtagc 123
||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 71 ccgactcatccattcacctgccaagaaccatgggcaagcggtaggtctggtcttggtagc 130
Query: 124 cgagtgggtggcgcgggagctaaaatcaagctctacgctgtttgtggttggactgaaggg 183
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 131 cgagtgggtggcgcgggagctaaaatcaaactctacgctgtttacggttggactgaaggg 190
Query: 184 tgctccctt 192
|||||||||
Sbjct: 191 tgctccctt 199
>42564_sbi-MIR319b:mirbase
Length = 179
Score = 264 bits (133), Expect = 2e-71
Identities = 167/179 (93%), Gaps = 7/179 (3%)
Strand = Plus / Plus
Query: 21 gagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactcatc 80
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 1 gagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatc 60
Query: 81 cattcacctgccaagaaccatggaca-------ggtctggtcttggtagccgagtgggtg 133
||||||||| |||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 61 cattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtgggtg 120
Query: 134 gcgcgggagctaaaatcaagctctacgctgtttgtggttggactgaagggtgctccctt 192
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 121 gcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccctt 179
>41994_osa-MIR319a:mirbase
Length = 191
Score = 153 bits (77), Expect = 6e-38
Identities = 154/178 (86%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 18 gaagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactc 77
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||
Sbjct: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
Query: 78 atccattcacctgccaagaaccatggacaggtctg---gtcttggtagccgagtgggtgg 134
|||||||||||| ||||||| || |||| || |||||||||| || ||| ||
Sbjct: 68 atccattcacctaccaagaaagttg--caggagtgtatctcttggtagcggactggatga 125
Query: 135 cgcgggagctaaaatcaagctctacgctgtttgtggttggactgaagggtgctccctt 192
||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 126 cgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctccctt 183
>41771_bdi-MIR319b:mirbase
Length = 190
Score = 141 bits (71), Expect = 2e-34
Identities = 151/175 (86%), Gaps = 2/175 (1%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactca 78
||||||||||||||||||||||||| | ||| ||||||||||| |||||||||||| |||
Sbjct: 7 aagagagctctcttcagtccactctcagatgactgtagggttttattagctgccgattca 66
Query: 79 tccattcacctgccaagaaccatggacaggtct-ggtcttggtagccgagtgggtggcgc 137
||||||||||| ||||||| |||| || | |||||||||||||| ||| |||| |
Sbjct: 67 tccattcacctaccaagaatcatgagggcgtatatgtcttggtagccgactggatggcac 126
Query: 138 gggagctaaaatcaagctctacgctgtttgtggttggactgaagggtgctccctt 192
|||||||| || ||||| | || |||||||||||||||||||||||||||||||
Sbjct: 127 gggagctacaa-aaagcttttcgttgtttgtggttggactgaagggtgctccctt 180
>40367_rco-MIR319a:mirbase
Length = 211
Score = 50.1 bits (25), Expect = 7e-07
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactca 78
||||||||| |||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 3 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 62
Query: 79 t 79
|
Sbjct: 63 t 63
>40369_rco-MIR319c:mirbase
Length = 188
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactc 42
||||||||||||||||||||||||
Sbjct: 3 aagagagctctcttcagtccactc 26
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 166 tgtggttggactgaagggtgctcccttt 193
|||| ||||||||||||| |||||||||
Sbjct: 158 tgtgcttggactgaagggagctcccttt 185
>41185_aqc-MIR319:mirbase
Length = 177
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 agagagctctcttcagtccactc 42
|||||||||||||||||||||||
Sbjct: 1 agagagctctcttcagtccactc 23
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 44.1 bits (22), Expect = 4e-05
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 18 gaagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactc 77
|||||||||| |||||||||||||| |||| ||||| || |||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 78 at 79
||
Sbjct: 68 at 69
>42783_zma-MIR319d:mirbase
Length = 212
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 171 ttggactgaagggtgctccct 191
|||||||||||||||||||||
Sbjct: 174 ttggactgaagggtgctccct 194
>42781_zma-MIR319b:mirbase
Length = 213
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 171 ttggactgaagggtgctccct 191
|||||||||||||||||||||
Sbjct: 175 ttggactgaagggtgctccct 195
>42563_sbi-MIR319:mirbase
Length = 249
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 171 ttggactgaagggtgctccct 191
|||||||||||||||||||||
Sbjct: 191 ttggactgaagggtgctccct 211
>41995_osa-MIR319b:mirbase
Length = 197
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 171 ttggactgaagggtgctccct 191
|||||||||||||||||||||
Sbjct: 168 ttggactgaagggtgctccct 188
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 42.1 bits (21), Expect = 2e-04
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactca 78
||||||||| |||||||||||||| ||| ||||| ||| ||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 79 t 79
|
Sbjct: 69 t 69
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 63 attagctgccgactcatccattca 86
||||||||||||||||| ||||||
Sbjct: 54 attagctgccgactcattcattca 77
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 63 attagctgccgactcatccattca 86
||||||||||||||||| ||||||
Sbjct: 56 attagctgccgactcattcattca 79
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 63 attagctgccgactcatccattca 86
||||||||||||||||| ||||||
Sbjct: 54 attagctgccgactcattcattca 77
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 166 tgtggttggactgaagggtgctcccttt 193
|||| ||||||||||||| |||||||||
Sbjct: 160 tgtgcttggactgaagggagctcccttt 187
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactc 42
||||||||| ||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactc 32
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 63 attagctgccgactcatccattca 86
||||||||||||||||| ||||||
Sbjct: 54 attagctgccgactcattcattca 77
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 166 tgtggttggactgaagggtgctcccttt 193
|||| ||||||||||||| |||||||||
Sbjct: 163 tgtgcttggactgaagggagctcccttt 190
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 ttggactgaagggtgctccctttt 194
||||||||||||| ||||||||||
Sbjct: 156 ttggactgaagggagctccctttt 179
>40703_mtr-MIR319:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 ttggactgaagggtgctccctttt 194
||||||||||||| ||||||||||
Sbjct: 169 ttggactgaagggagctccctttt 192
>40465_gma-MIR319b:mirbase
Length = 208
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 ttggactgaagggtgctccctttt 194
||||||||||||| ||||||||||
Sbjct: 170 ttggactgaagggagctccctttt 193
>40464_gma-MIR319a:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactc 42
||||||||| ||||||||||||||
Sbjct: 19 aagagagctttcttcagtccactc 42
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 ttggactgaagggtgctccctttt 194
||||||||||||| ||||||||||
Sbjct: 169 ttggactgaagggagctccctttt 192
