miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01002190.1/69225-69027 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 287 bits (145), Expect = 3e-77
Identities = 185/199 (92%), Gaps = 7/199 (3%)
Strand = Plus / Plus
Query: 11 ttctctggaagagagctctcttcagtccactctgaaatggctgtagggtttcattagctg 70
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 1 ttctctggaagagagctctcttcagtccactctaaaatggctgtagagtttcattagctg 60
Query: 71 ccgactcatccattcacctgccaagaaccatggac-------aggtctggtcttggtagc 123
||||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct: 61 ccgactcatccattcacctaccaagaaccatggacaagcgataggtttggtcttggtagc 120
Query: 124 cgagtgggtggcgcgggagctaaaatcaagctctacgctgtttgtggttggactgaaggg 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 cgagtgggtggcgcgggagctaaaatcaagctctacgctgtttatggttggactgaaggg 180
Query: 184 tgctcccttttgtttgctc 202
|||||||||| |||||||
Sbjct: 181 tgctccctttaatttgctc 199
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa Japonica
Group
Length = 193
Score = 153 bits (77), Expect = 1e-36
Identities = 154/178 (86%), Gaps = 5/178 (2%)
Strand = Plus / Plus
Query: 18 gaagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactc 77
|||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| ||
Sbjct: 8 gaagagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatc 67
Query: 78 atccattcacctgccaagaaccatggacaggtctg---gtcttggtagccgagtgggtgg 134
|||||||||||| ||||||| || |||| || |||||||||| || ||| ||
Sbjct: 68 atccattcacctaccaagaaagttg--caggagtgtatctcttggtagcggactggatga 125
Query: 135 cgcgggagctaaaatcaagctctacgctgtttgtggttggactgaagggtgctccctt 192
||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 126 cgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctccctt 183
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactctgaaatggctgtagggtttcattagctgccgactca 78
||||||||| |||||||||||||| |||| ||||| ||| ||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68
Query: 79 t 79
|
Sbjct: 69 t 69
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactc 42
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 aagagagctctcttcagtccactc 42
||||||||||||||||||||||||
Sbjct: 9 aagagagctctcttcagtccactc 32
