miRNEST 2.0, an integrative microRNA resource :: BLAST
>55052_zma-miR319d:pmrd
Length = 212
Score = 341 bits (172), Expect = 1e-94
Identities = 181/184 (98%)
Strand = Plus / Plus
Query: 14 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgcc 73
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 13 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgcc 72
Query: 74 gactcattcacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaa 133
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 73 gactcattcacccacatgccaagcaaacggccatggaaacgagcttcgcagatgagtgaa 132
Query: 134 tgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 tgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 192
Query: 194 ctcc 197
||||
Sbjct: 193 ctcc 196
>54468_sbi-miR319:pmrd
Length = 249
Score = 335 bits (169), Expect = 8e-93
Identities = 191/198 (96%), Gaps = 4/198 (2%)
Strand = Plus / Plus
Query: 8 atggctggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaatta 67
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 atggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaatta 79
Query: 68 gctgccgactcattcacccacatgccaagcaaacggccatggaaa----ccagctttgca 123
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 80 gctgccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgca 139
Query: 124 gatgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactga 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 140 gatgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactga 199
Query: 184 agggtgctccctcctccc 201
||||||||||||||||||
Sbjct: 200 agggtgctccctcctccc 217
>55053_zma-miR319e:pmrd
Length = 173
Score = 319 bits (161), Expect = 5e-88
Identities = 170/173 (98%)
Strand = Plus / Plus
Query: 22 gagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcatt 81
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactcatt 60
Query: 82 cacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaatgaagcgg 141
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 61 cacccacatgccaagcaaacggccatggaaacgagcttcgcagatgagtgaatgaagcgg 120
Query: 142 gaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 194
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 173
>48915_osa-miR319b:pmrd
Length = 197
Score = 210 bits (106), Expect = 3e-55
Identities = 173/192 (90%), Gaps = 5/192 (2%)
Strand = Plus / Plus
Query: 13 tggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgc 72
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3 tggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgc 62
Query: 73 cgactcattcacccacatgccaagca--aacggccatggaaacc--agctttgcagatga 128
|||||||||||||||||||||||||| || || || | | ||||| ||||||||
Sbjct: 63 cgactcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatga 122
Query: 129 gtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggt 188
|||||||||||||||||| || | | ||||||||| ||||||||||||||||||||||||
Sbjct: 123 gtgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggt 181
Query: 189 gctccctcctcc 200
||||||||||||
Sbjct: 182 gctccctcctcc 193
>54844_vvi-miR319c:pmrd
Length = 182
Score = 58.0 bits (29), Expect = 3e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 19 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 78
||||||||| | |||||||||||||| ||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 79 attca 83
|||||
Sbjct: 68 attca 72
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 172 tgcttggactgaagggtgctccct 195
|||||||||||||||| |||||||
Sbjct: 148 tgcttggactgaagggagctccct 171
>51707_ptc-miR319a:pmrd
Length = 188
Score = 56.0 bits (28), Expect = 1e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 20 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 79
|||||||| | |||||||||||||| ||| ||| |||| | |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 80 ttca 83
||||
Sbjct: 69 ttca 72
>54642_sof-miR319a:pmrd
Length = 539
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 175 ttggactgaagggtgctccctcctccc 201
|||||||||||||||||||||||||||
Sbjct: 1 ttggactgaagggtgctccctcctccc 27
>51712_ptc-miR319f:pmrd
Length = 202
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 gggtcgaattagctgccgactcattca 83
|||| ||||||||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattca 75
>51351_ppl-miR319:pmrd
Length = 204
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 gaattagctgccgactcattca 83
||||||||||||||||||||||
Sbjct: 53 gaattagctgccgactcattca 74
>48694_mma-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctcc 197
|||||| ||||||||||||| |||||||||
Sbjct: 154 tctttgattggactgaagggagctccctcc 183
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 aattagctgccgactcattcacccacatgc 92
||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcatccaaatgc 92
>55051_zma-miR319c:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggactgaagggtgctccct 195
|||||||||||||||||||||
Sbjct: 178 ttggactgaagggtgctccct 198
>55049_zma-miR319a:pmrd
Length = 209
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggactgaagggtgctccct 195
|||||||||||||||||||||
Sbjct: 171 ttggactgaagggtgctccct 191
>54846_vvi-miR319f:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 20 aagagagcgtccttcagtccactca 44
|||||||| ||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactca 33
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 167 gtctttgcttggactgaagggtgctccct 195
|||| |||||||||||||||| |||||||
Sbjct: 154 gtctgtgcttggactgaagggagctccct 182
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 attagctgccgactcattca 83
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
>54469_sbi-miR319b:pmrd
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggactgaagggtgctccct 195
|||||||||||||||||||||
Sbjct: 158 ttggactgaagggtgctccct 178
>48914_osa-miR319a:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 175 ttggactgaagggtgctccct 195
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggtgctccct 182
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 aattagctgccgactcattca 83
|||||||||||||||||||||
Sbjct: 62 aattagctgccgactcattca 82
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 121 gcagatgagtgaatgaagcgggag 144
|||||||||||||||| |||||||
Sbjct: 118 gcagatgagtgaatgatgcgggag 141
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 aattagctgccgactcattcacccacat 90
|||||||| |||||||||||| ||||||
Sbjct: 52 aattagcttccgactcattcatccacat 79
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 155 tctttgattggactgaagggagctccctc 183
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 155 tctttgattggactgaagggagctccctc 183
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 44 tctttgattggactgaagggagctccctc 16
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 147 tctttgattggactgaagggagctccctc 175
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccctc 196
|||||| ||||||||||||| ||||||||
Sbjct: 153 tctttgattggactgaagggagctccctc 181
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 attagctgccgactcattca 83
||||||||||||||||||||
Sbjct: 42 attagctgccgactcattca 61
>51710_ptc-miR319d:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 attagctgccgactcattca 83
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 172 tgcttggactgaagggtgctccct 195
|||||||||||||||| |||||||
Sbjct: 162 tgcttggactgaagggagctccct 185
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 attagctgccgactcattca 83
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 172 tgcttggactgaagggtgctccct 195
|||||||||||||||| |||||||
Sbjct: 165 tgcttggactgaagggagctccct 188
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccct 195
|||||| ||||||||||||| |||||||
Sbjct: 154 tctttgattggactgaagggagctccct 181
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 7e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 168 tctttgcttggactgaagggtgctccct 195
|||||| ||||||||||||| |||||||
Sbjct: 156 tctttgattggactgaagggagctccct 183
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 172 tgcttggactgaagggtgctccct 195
|||||||||||||||| |||||||
Sbjct: 149 tgcttggactgaagggagctccct 172
