miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42783_zma-MIR319d:mirbase
Length = 212
Score = 420 bits (212), Expect = e-118
Identities = 212/212 (100%)
Strand = Plus / Plus
Query: 1 tggtcgccggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtcgccggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtc 60
Query: 61 ggattagctgccgactcattcacccacatgccaagcaaacggccatggaaacgagcttcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggattagctgccgactcattcacccacatgccaagcaaacggccatggaaacgagcttcg 120
Query: 121 cagatgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagatgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggact 180
Query: 181 gaagggtgctccctccgatcctttccttgttt 212
||||||||||||||||||||||||||||||||
Sbjct: 181 gaagggtgctccctccgatcctttccttgttt 212
>42781_zma-MIR319b:mirbase
Length = 213
Score = 341 bits (172), Expect = 1e-94
Identities = 181/184 (98%)
Strand = Plus / Plus
Query: 13 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgcc 72
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 14 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgcc 73
Query: 73 gactcattcacccacatgccaagcaaacggccatggaaacgagcttcgcagatgagtgaa 132
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 74 gactcattcacccacatgccaagcaaacggccatggaaaccagctttgcagatgagtgaa 133
Query: 133 tgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 tgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctcc 193
Query: 193 ctcc 196
||||
Sbjct: 194 ctcc 197
>42563_sbi-MIR319:mirbase
Length = 249
Score = 323 bits (163), Expect = 3e-89
Identities = 185/192 (96%), Gaps = 4/192 (2%)
Strand = Plus / Plus
Query: 9 ggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagc 68
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 22 ggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagc 81
Query: 69 tgccgactcattcacccacatgccaagcaaacggccatggaaacg----agcttcgcaga 124
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 82 tgccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcaga 141
Query: 125 tgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaag 184
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 142 tgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaag 201
Query: 185 ggtgctccctcc 196
||||||||||||
Sbjct: 202 ggtgctccctcc 213
>41995_osa-MIR319b:mirbase
Length = 197
Score = 194 bits (98), Expect = 2e-50
Identities = 168/188 (89%), Gaps = 5/188 (2%)
Strand = Plus / Plus
Query: 13 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgcc 72
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 4 ggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgcc 63
Query: 73 gactcattcacccacatgccaagc---aaacggccatggaaacg-agcttcgcagatgag 128
|||||||||||||||||||||||| ||||| | | || ||||| |||||||||
Sbjct: 64 gactcattcacccacatgccaagcaagaaacgcttgagatagcgaagcttagcagatgag 123
Query: 129 tgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtg 188
||||||||||||||||| || | | ||||||||| |||||||||||||||||||||||||
Sbjct: 124 tgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggtg 182
Query: 189 ctccctcc 196
||||||||
Sbjct: 183 ctccctcc 190
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 50.1 bits (25), Expect = 7e-07
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 18 gaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactc 77
||||||||| | |||||||||||||| ||| || |||| | | |||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 78 attca 82
|||||
Sbjct: 68 attca 72
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggtgctccct 194
|||||||||||||||| |||||||
Sbjct: 148 tgcttggactgaagggagctccct 171
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 48.1 bits (24), Expect = 3e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 19 aagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactca 78
|||||||| | |||||||||||||| ||| ||| |||| | ||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 79 ttca 82
||||
Sbjct: 69 ttca 72
>40703_mtr-MIR319:mirbase
Length = 207
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 167 tctttgcttggactgaagggtgctccct 194
|||||||||||||||||||| |||||||
Sbjct: 162 tctttgcttggactgaagggagctccct 189
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 gaagagagcgtccttcagtccactca 43
||||||||| ||||||||||||||||
Sbjct: 17 gaagagagcttccttcagtccactca 42
>40367_rco-MIR319a:mirbase
Length = 211
Score = 48.1 bits (24), Expect = 3e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 19 aagagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactca 78
|||||||| | |||||||||||||| ||| || | |||| | ||||||||||||||||
Sbjct: 3 aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 62
Query: 79 ttca 82
||||
Sbjct: 63 ttca 66
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 46.1 bits (23), Expect = 1e-05
Identities = 57/66 (86%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 19 aagagagcgtccttcagtccactcaggggcggtgctaggg--tcggattagctgccgact 76
|||||||| |||||||||||||||| || || | ||||| | ||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactcatggatgg-gttaggggtttggattagctgccgact 67
Query: 77 cattca 82
||||||
Sbjct: 68 cattca 73
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 166 gtctttgcttggactgaagggtgctccct 194
|||| |||||||||||||||| |||||||
Sbjct: 154 gtctgtgcttggactgaagggagctccct 182
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ggattagctgccgactcattca 82
||||||||||||||||||||||
Sbjct: 52 ggattagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggtgctccct 194
|||||||||||||||| |||||||
Sbjct: 162 tgcttggactgaagggagctccct 185
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 ggattagctgccgactcattca 82
||||||||||||||||||||||
Sbjct: 52 ggattagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggtgctccct 194
|||||||||||||||| |||||||
Sbjct: 165 tgcttggactgaagggagctccct 188
>42782_zma-MIR319c:mirbase
Length = 216
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggtgctccct 194
|||||||||||||||||||||
Sbjct: 178 ttggactgaagggtgctccct 198
>42780_zma-MIR319a:mirbase
Length = 209
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggtgctccct 194
|||||||||||||||||||||
Sbjct: 171 ttggactgaagggtgctccct 191
>42642_tae-MIR319:mirbase
Length = 211
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggtgctccctc 195
|||||||||||||||| ||||||||
Sbjct: 181 tgcttggactgaagggagctccctc 205
>42564_sbi-MIR319b:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggtgctccct 194
|||||||||||||||||||||
Sbjct: 158 ttggactgaagggtgctccct 178
>41994_osa-MIR319a:mirbase
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggtgctccct 194
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggtgctccct 182
>41771_bdi-MIR319b:mirbase
Length = 190
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 174 ttggactgaagggtgctccct 194
|||||||||||||||||||||
Sbjct: 159 ttggactgaagggtgctccct 179
>41770_bdi-MIR319:mirbase
Length = 280
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggtgctccctc 195
|||||||||||||||| ||||||||
Sbjct: 223 tgcttggactgaagggagctccctc 247
>40465_gma-MIR319b:mirbase
Length = 208
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 attagctgccgactcattcacccacatgc 91
|||||||||||||||||||| ||| ||||
Sbjct: 64 attagctgccgactcattcatccaaatgc 92
>40069_ath-MIR319a:mirbase
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 167 tctttgcttggactgaagggtgctccctc 195
|||||| ||||||||||||| ||||||||
Sbjct: 147 tctttgattggactgaagggagctccctc 175
>39858_aly-MIR319a:mirbase
Length = 221
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 167 tctttgcttggactgaagggtgctccctc 195
|||||| ||||||||||||| ||||||||
Sbjct: 170 tctttgattggactgaagggagctccctc 198
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 attagctgccgactcattca 82
||||||||||||||||||||
Sbjct: 56 attagctgccgactcattca 75
>40464_gma-MIR319a:mirbase
Length = 207
Score = 40.1 bits (20), Expect = 7e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 attagctgccgactcattca 82
||||||||||||||||||||
Sbjct: 63 attagctgccgactcattca 82
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 120 gcagatgagtgaatgaagcgggag 143
|||||||||||||||| |||||||
Sbjct: 118 gcagatgagtgaatgatgcgggag 141
>40369_rco-MIR319c:mirbase
Length = 188
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggtgctccct 194
|||||||||||||||| |||||||
Sbjct: 160 tgcttggactgaagggagctccct 183
>40368_rco-MIR319b:mirbase
Length = 179
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 173 cttggactgaagggtgctccctcc 196
|||||||||||||| |||||||||
Sbjct: 153 cttggactgaagggagctccctcc 176
>40070_ath-MIR319b:mirbase
Length = 172
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggtgctccct 194
|||||||||||||||| |||||||
Sbjct: 149 tgcttggactgaagggagctccct 172
>39859_aly-MIR319b:mirbase
Length = 246
Score = 40.1 bits (20), Expect = 7e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 171 tgcttggactgaagggtgctccct 194
|||||||||||||||| |||||||
Sbjct: 188 tgcttggactgaagggagctccct 211
