miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42784_zma-MIR390a:mirbase
Length = 181
Score = 351 bits (177), Expect = 1e-97
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcctaggaaaacacatagatcggagccggccgcgaggagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aagctcaggagggatagcgcctaggaaaacacatagatcggagccggccgcgaggagaaa 61
Query: 61 gaaagagccaagagatatgtgtgatgaataatctacatggatcttggctagcttttgtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gaaagagccaagagatatgtgtgatgaataatctacatggatcttggctagcttttgtgt 121
Query: 121 tctcctctggaggcgtggttctgtctatcaatctgaagcgctatctatcctgagctc 177
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tctcctctggaggcgtggttctgtctatcaatctgaagcgctatctatcctgagctc 178
>42565_sbi-MIR390:mirbase
Length = 179
Score = 85.7 bits (43), Expect = 1e-17
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcctaggaaaacacatagatcggagccggccgcgaggagaaa 60
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct: 3 aagctcaggagggatagcgcctaggaaaacacatagattggagctagccatgaggagaaa 62
Query: 61 gaaagag 67
|| ||||
Sbjct: 63 gagagag 69
Score = 83.8 bits (42), Expect = 4e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 136 tggttctgtctatcaatctgaagcgctatctatcctgagctc 177
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tggttctgtctatcaatctgaagcgctatctatcctgagctc 176
>42785_zma-MIR390b:mirbase
Length = 192
Score = 63.9 bits (32), Expect = 4e-11
Identities = 44/47 (93%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcctaggaaa--acacatagatcggagcc 45
|||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 2 aagctcaggagggatagcgcctaggaaatcacacatagattggagcc 48
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 gaagcgctatctatcctgagctc 177
|||||||||||||||||||||||
Sbjct: 167 gaagcgctatctatcctgagctc 189
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcctagg 25
|||||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcctagg 43
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 gaagcgctatctatcctgagctc 177
|||||||||||||||||||||||
Sbjct: 143 gaagcgctatctatcctgagctc 165
>41772_bdi-MIR390:mirbase
Length = 209
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcctagg 25
|||||||||||||||||||||||||
Sbjct: 31 aagctcaggagggatagcgcctagg 55
Score = 46.1 bits (23), Expect = 9e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 155 gaagcgctatctatcctgagctc 177
|||||||||||||||||||||||
Sbjct: 155 gaagcgctatctatcctgagctc 177
>41996_osa-MIR390:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcct 22
||||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcct 40
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 158 gcgctatctatcctgagctc 177
||||||||||||||||||||
Sbjct: 55 gcgctatctatcctgagctc 74
>41640_vvi-MIR390:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41237_csi-MIR390:mirbase
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>40705_mtr-MIR390:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40468_gma-MIR390a:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>40467_gma-MIR390a:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>40372_rco-MIR390b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40371_rco-MIR390a:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40294_bna-MIR390c:mirbase
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgcc 43
>40293_bna-MIR390b:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>40292_bna-MIR390a:mirbase
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgcc 53
>40073_ath-MIR390b:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>40072_ath-MIR390a:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>39863_aly-MIR390b:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>39862_aly-MIR390a:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 29 aagctcaggagggatagcgcc 49
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgcc 36
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgcc 21
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
