miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>55061_zma-miR393e:pmrd
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Minus
Query: 1 actccaaagggatcgcattgatctattctcactgccgctgctgcttgcgatgcgagtcga 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 89 actccaaagggatcgcattgatctattctcactgccgctgctgcatgcgatgcgagtcga 30
Query: 61 cgacaagatcagtgcaatccctttggaat 89
|||||||||||||||||||||||||||||
Sbjct: 29 cgacaagatcagtgcaatccctttggaat 1
>55060_zma-miR393d:pmrd
Length = 91
Score = 141 bits (71), Expect = 9e-35
Identities = 88/91 (96%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 1 actccaaagggatcgcattgatctattctcac-tgccgc-tgctgcttgcgatgcgagtc 58
|||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct: 91 actccaaagggatcgcattgatctattctcacctgccgcctgctgcatgcgatgcgagtc 32
Query: 59 gacgacaagatcagtgcaatccctttggaat 89
|||||||||||||||||||||||||||||||
Sbjct: 31 gacgacaagatcagtgcaatccctttggaat 1
>55056_zma-miR393:pmrd
Length = 126
Score = 141 bits (71), Expect = 9e-35
Identities = 88/91 (96%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 actccaaagggatcgcattgatctattctcac-tgccgc-tgctgcttgcgatgcgagtc 58
|||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct: 19 actccaaagggatcgcattgatctattctcacctgccgcctgctgcatgcgatgcgagtc 78
Query: 59 gacgacaagatcagtgcaatccctttggaat 89
|||||||||||||||||||||||||||||||
Sbjct: 79 gacgacaagatcagtgcaatccctttggaat 109
>55063_zma-miR393g:pmrd
Length = 87
Score = 133 bits (67), Expect = 2e-32
Identities = 84/87 (96%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatctattctcac-tgccgc-tgctgcttgcgatgcgagtcga 60
|||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatctattctcacctgccgcctgctgcatgcgatgcgagtcga 60
Query: 61 cgacaagatcagtgcaatccctttgga 87
|||||||||||||||||||||||||||
Sbjct: 61 cgacaagatcagtgcaatccctttgga 87
>55058_zma-miR393b:pmrd
Length = 91
Score = 133 bits (67), Expect = 2e-32
Identities = 87/91 (95%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 actccaaagggatcgcattgatctattctcac-tgccgc-tgctgcttgcgatgcgagtc 58
|||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||
Sbjct: 1 actccaaagggatcgcattgatctattctcacctgccgcctgctggatgcgatgcgagtc 60
Query: 59 gacgacaagatcagtgcaatccctttggaat 89
|||||||||||||||||||||||||||||||
Sbjct: 61 gacgacaagatcagtgcaatccctttggaat 91
>48919_osa-miR393b:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 actccaaagggatcgcattgatct 24
||||||||||||||||||||||||
Sbjct: 25 actccaaagggatcgcattgatct 48
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 gatcagtgcaatccctttggaat 89
|||||||||||||||||||||||
Sbjct: 101 gatcagtgcaatccctttggaat 123
>48918_osa-miR393b:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 actccaaagggatcgcattgatct 24
||||||||||||||||||||||||
Sbjct: 25 actccaaagggatcgcattgatct 48
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 67 gatcagtgcaatccctttggaat 89
|||||||||||||||||||||||
Sbjct: 101 gatcagtgcaatccctttggaat 123
>51723_ptc-miR393d:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatcta 25
|||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcta 33
>51722_ptc-miR393c:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatcta 25
|||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcta 33
>48501_ghr-miR393:pmrd
Length = 119
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatcta 25
|||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcta 23
>55062_zma-miR393f:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>55057_zma-miR393a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>54850_vvi-miR393b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>54849_vvi-miR393a:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>54470_sbi-miR393:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>53841_ptc-miRf12019-akr:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 17 tccaaagggatcgcattgatc 37
>53840_ptc-miRf12018-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 14 tccaaagggatcgcattgatc 34
>52949_ptc-miRf11127-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 14 tccaaagggatcgcattgatc 34
>52948_ptc-miRf11126-akr:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 14 tccaaagggatcgcattgatc 34
>52374_ptc-miRf10552-akr:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 14 tccaaagggatcgcattgatc 34
>51972_ptc-miRf10150-akr:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 82 tccaaagggatcgcattgatc 62
>51950_ptc-miRf10128-akr:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 17 tccaaagggatcgcattgatc 37
>51721_ptc-miR393b:pmrd
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>51720_ptc-miR393a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48917_osa-miR393:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48731_mtr-miR393b:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatc 26
>48730_mtr-miR393:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>48576_gma-miR393:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>48373_bna-miR393:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>47287_ath-miRf10187-akr:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 12 tccaaagggatcgcattgatc 32
>47214_ath-miRf10114-akr:pmrd
Length = 131
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 10 tccaaagggatcgcattgatc 30
>46999_ath-miR393b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>46998_ath-miR393a:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 tccaaagggatcgcattgatc 23
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
