miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42787_zma-MIR393b:mirbase
Length = 108
Score = 206 bits (104), Expect = 2e-54
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatccatcattccttccattttttcatgcatggctggtcttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tccaaagggatcgcattgatccatcattccttccattttttcatgcatggctggtcttcg 61
Query: 61 tcgtctgcaaggacttgtcgatggatcaatgcgatccttttgga 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcgtctgcaaggacttgtcgatggatcaatgcgatccttttgga 105
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 80 gatggatcaatgcgatccttttgga 104
|||||||||||||||||| ||||||
Sbjct: 26 gatggatcaatgcgatccctttgga 2
Score = 42.1 bits (21), Expect = 8e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 tccaaagggatcgcattgatccatc 25
|||||| ||||||||||||||||||
Sbjct: 105 tccaaaaggatcgcattgatccatc 81
>42566_sbi-MIR393:mirbase
Length = 139
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatccatcattccttccatt 37
|||||||||||||||||||||| ||| ||||||||||
Sbjct: 20 tccaaagggatcgcattgatccgtcactccttccatt 56
>41997_osa-MIR393:mirbase
Length = 115
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatccatcat 27
|||||||||||||||||||||| ||||
Sbjct: 11 tccaaagggatcgcattgatccttcat 37
>41774_bdi-MIR393a:mirbase
Length = 159
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 36 tccaaagggatcgcattgatcc 57
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 77 gtcgatggatcaatgcgatccttttgga 104
||||| ||||||||||||||| ||||||
Sbjct: 63 gtcgaaggatcaatgcgatccctttgga 36
>41642_vvi-MIR393b:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>41641_vvi-MIR393a:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>41418_ptc-MIR393b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>41417_ptc-MIR393a:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>41238_csi-MIR393:mirbase
Length = 145
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatcc 42
>41132_tcc-MIR393a:mirbase
Length = 118
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatcc 42
>40707_mtr-MIR393b:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatcc 27
>40706_mtr-MIR393:mirbase
Length = 135
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatcc 42
>40470_gma-MIR393:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>40295_bna-MIR393:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatcc 22
>40076_ath-MIR393b:mirbase
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>40075_ath-MIR393a:mirbase
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatcc 32
>39866_aly-MIR393b:mirbase
Length = 169
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 18 tccaaagggatcgcattgatcc 39
>39865_aly-MIR393a:mirbase
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatcc 22
||||||||||||||||||||||
Sbjct: 18 tccaaagggatcgcattgatcc 39
>42788_zma-MIR393c:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 2 tccaaagggatcgcattgatc 22
>42786_zma-MIR393a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>42567_sbi-MIR393b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 1 tccaaagggatcgcattgatc 21
>41999_osa-MIR393b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>41998_osa-MIR393b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 27 tccaaagggatcgcattgatc 47
>41775_bdi-MIR393b:mirbase
Length = 174
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 42 tccaaagggatcgcattgatc 62
>41420_ptc-MIR393d:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41419_ptc-MIR393c:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>41133_tcc-MIR393b:mirbase
Length = 158
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 21 tccaaagggatcgcattgatc 41
>41054_ghr-MIR393:mirbase
Length = 139
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 11 tccaaagggatcgcattgatc 31
>40373_rco-MIR393:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tccaaagggatcgcattgatc 21
|||||||||||||||||||||
Sbjct: 6 tccaaagggatcgcattgatc 26
