miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 77.8 bits (39), Expect = 3e-14
Identities = 99/117 (84%), Gaps = 4/117 (3%)
Strand = Plus / Plus
Query: 14 tcccttggagttccctgcaaacacttcaccagctaggccatagt--gccggcccttgcac 71
|||| |||||||||||||||||||||||| |||||| ||||| | ||||||||||
Sbjct: 4 tcccctggagttccctgcaaacacttcacaagctagaccatatatagtatgcccttgcac 63
Query: 72 aatgttgtatctgatcacctagctagtgtgaagtgtttggaggaactctaggtgtta 128
||||| ||||| | |||||||||||| |||||||||| ||||||||||||||||
Sbjct: 64 aatgtggtatccagttacctagctagtg--aagtgtttgggggaactctaggtgtta 118
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 98 tgtgaagtgtttggaggaactctaggtgtta 128
|||||||||||||| ||||||||||||||||
Sbjct: 78 tgtgaagtgtttgggggaactctaggtgtta 108
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 92 agctagtgtgaagtgtttggaggaactctaggtg 125
||||| |||||||||||||| |||||||||||||
Sbjct: 75 agctactgtgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;AF402959.1/7545-7457 4530:Oryza sativa (rice)
Length = 89
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 98 tgtgaagtgtttggaggaactctaggtgt 126
||||||||||||||||||||||| |||||
Sbjct: 58 tgtgaagtgtttggaggaactctcggtgt 86
>RF00451;mir-395;ABXC01004559.1/91066-91167 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 98 tgtgaagtgtttggaggaactct 120
|||||||||||||||||||||||
Sbjct: 71 tgtgaagtgtttggaggaactct 93
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 gtgaagtgtttggaggaactctaggtg 125
||||||||||||| |||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 100 tgaagtgtttggaggaactctaggtg 125
|||||||||||| |||||||||||||
Sbjct: 80 tgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 92 agctagtgtgaagtgtttggaggaactctaggtg 125
||||| |||||||||||||| |||||||| ||||
Sbjct: 75 agctattgtgaagtgtttgggggaactctcggtg 108
