miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 8 tggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactg 60
Query: 68 tctggtaacgatgtttaaagagtgagcca 96
|||||||||||||||||||||||||||||
Sbjct: 61 tctggtaacgatgtttaaagagtgagcca 89
>25991_gga-mir-200a:mirbase
Length = 87
Score = 111 bits (56), Expect = 1e-25
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 9 ggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactgt 68
|||||||| ||| ||||||||||||||||||||||||| || |||| ||||||||||||
Sbjct: 1 ggtcctctgtgggcatcttactagacagtgctggatttcttggatctattctaacactgt 60
Query: 69 ctggtaacgatgtttaaagagtga 92
||||||||||||||||||| ||||
Sbjct: 61 ctggtaacgatgtttaaagggtga 84
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 89.7 bits (45), Expect = 4e-19
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 8 tggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactg 67
||||||||| ||| ||||||||||||||||||||||||| | ||| ||||||||||
Sbjct: 9 tggtcctctgtgggcatcttactagacagtgctggatttgctgcctctactctaacactg 68
Query: 68 tctggtaacgatgtttaaagagtga 92
|||||||||||||||||||| ||||
Sbjct: 69 tctggtaacgatgtttaaagggtga 93
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 12 cctctatggacatcttactagacagtgctggatttattttatcttttctaacactgtctg 71
||||| ||| ||||||||||||||||||||||||| || || | ||||||||||||||
Sbjct: 4 cctctgtgggcatcttactagacagtgctggattt-ttggatgtactctaacactgtctg 62
Query: 72 gtaacgatgtttaaagag 89
||||||||||||||||||
Sbjct: 63 gtaacgatgtttaaagag 80
>31528_oan-mir-200a:mirbase
Length = 114
Score = 63.9 bits (32), Expect = 2e-11
Identities = 65/75 (86%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 8 tggtcctctatggacatcttactagacagtgctggatttattttatcttttctaacactg 67
|||||||| ||| |||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 16 tggtcctccgtgggcatcttactagacagtgctggatt--tgggatctactctaacactg 73
Query: 68 tctggtaacgatgtt 82
|||||||||||||||
Sbjct: 74 tctggtaacgatgtt 88
>34355_dre-mir-200a:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 55 ttttctaacactgtctggtaacgatgttt 83
|||||||||||||||||||||||||||||
Sbjct: 47 ttttctaacactgtctggtaacgatgttt 75
>33278_bta-mir-200a:mirbase
Length = 86
Score = 56.0 bits (28), Expect = 5e-09
Identities = 64/76 (84%)
Strand = Plus / Plus
Query: 12 cctctatggacatcttactagacagtgctggatttattttatcttttctaacactgtctg 71
||||| |||||||||||| ||||||||||||||| | || ||||||||||||||
Sbjct: 4 cctctgtggacatcttaccggacagtgctggatttctcggctcgactctaacactgtctg 63
Query: 72 gtaacgatgtttaaag 87
||||||||||| ||||
Sbjct: 64 gtaacgatgttcaaag 79
>34628_fru-mir-200a:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 ttctaacactgtctggtaacgatgttt 83
|||||||||||||||||||||||||||
Sbjct: 47 ttctaacactgtctggtaacgatgttt 73
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>27087_eca-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>27798_mml-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatgttcaaag 80
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>32788_rno-mir-200a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 52 tctaacactgtctggtaacgatgttcaaag 81
>33035_rno-mir-3548:mirbase
Length = 120
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 58 tctaacactgtctggtaacgatgtttaaag 87
||||||||||||||||||||||||| ||||
Sbjct: 51 tctaacactgtctggtaacgatgttcaaag 22
>34775_tni-mir-200a:mirbase
Length = 62
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 ttctaacactgtctggtaacgatgtt 82
||||||||||||||||||||||||||
Sbjct: 37 ttctaacactgtctggtaacgatgtt 62
>34310_dre-mir-141:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttctaacactgtctggtaacgatg 80
||||||||||||||||||||||||
Sbjct: 48 ttctaacactgtctggtaacgatg 71
>25328_csa-mir-141:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ttctaacactgtctggtaacgatg 80
||||||||||||||||||| ||||
Sbjct: 45 ttctaacactgtctggtaaagatg 68
>27389_mdo-mir-141:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 ttctaacactgtctggtaacgatg 80
||||||||||||||||||| ||||
Sbjct: 38 ttctaacactgtctggtaaagatg 61
