miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25666_xla-mir-142:mirbase
Length = 86
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 61
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 62 ctactttatggatgagtgtac 82
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 61
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 62 ctactttatggatgagtgtac 82
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 61
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 62 ctactttatggatgagtgtac 82
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 61
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 62 ctactttatggatgagtgtac 82
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 61
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 62 ctactttatggatgagtgtac 82
>25962_gga-mir-142:mirbase
Length = 88
Score = 113 bits (57), Expect = 2e-26
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttc 63
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 64 ctactttatggatgagtgtac 84
>25963_gga-mir-142:mirbase
Length = 88
Score = 113 bits (57), Expect = 2e-26
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttc 63
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 64 ctactttatggatgagtgtac 84
>27746_mml-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>27747_mml-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>28461_hsa-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>28462_hsa-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>30234_ptr-mir-142:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>30845_ppy-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>30846_ppy-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>32747_rno-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>32748_rno-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>33228_bta-mir-142:mirbase
Length = 87
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||
Sbjct: 4 agtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>33991_ssc-mir-142:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 2 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 61
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
Query: 62 tactttatggatgagtgtac 81
||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtac 79
>33992_ssc-mir-142:mirbase
Length = 80
Score = 103 bits (52), Expect = 2e-23
Identities = 74/80 (92%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 2 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 61
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
Query: 62 tactttatggatgagtgtac 81
||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtac 79
>26473_tgu-mir-142:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 3 tgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcct 62
||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
Query: 63 actttatggat 73
|||||||||||
Sbjct: 61 actttatggat 71
>31499_oan-mir-142:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 3e-19
Identities = 73/81 (90%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| || ||||||||||||||||||||||| |||| ||| | | |||||||||||
Sbjct: 17 agtgcagtcatccataaagtagaaagcactacta-acagcgctgtagggtgtagtgtttc 75
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 76 ctactttatggatgagtgtac 96
>27390_mdo-mir-142:mirbase
Length = 74
Score = 85.7 bits (43), Expect = 4e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 4 gcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttccta 63
|||| |||||||||||||||||||||||||| |||| | || | | ||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactacta-acagcaatgtagggtgtagtgtttccta 59
Query: 64 ctttatggatgagtg 78
|||||||||||||||
Sbjct: 60 ctttatggatgagtg 74
>27041_eca-mir-142:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 acccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttat 69
||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttat 59
Query: 70 ggatg 74
|||||
Sbjct: 60 ggatg 64
>27042_eca-mir-142:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 acccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttat 69
||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttat 59
Query: 70 ggatg 74
|||||
Sbjct: 60 ggatg 64
>31874_mmu-mir-142:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 acccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttat 69
||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttat 59
Query: 70 ggatg 74
|||||
Sbjct: 60 ggatg 64
>31875_mmu-mir-142:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 10 acccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttat 69
||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttat 59
Query: 70 ggatg 74
|||||
Sbjct: 60 ggatg 64
>26716_cfa-mir-142:mirbase
Length = 63
Score = 79.8 bits (40), Expect = 3e-16
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 11 cccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttatg 70
|||||||||||||||||||||||| |||| |||| | | |||||||||||||||||||||
Sbjct: 1 cccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttatg 59
Query: 71 gatg 74
||||
Sbjct: 60 gatg 63
>34604_fru-mir-142b:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 9 cacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctacttta 68
|||||||||||||||||||||||||| || || || |||||||||||||||||||
Sbjct: 11 cacccataaagtagaaagcactactaaactattctacacagtgtagtgtttcctacttta 70
Query: 69 tggatgagtg 78
||||||||||
Sbjct: 71 tggatgagtg 80
>34311_dre-mir-142a:mirbase
Length = 91
Score = 65.9 bits (33), Expect = 4e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| || ||||||||||||||||||||||| || | || |||||||||||
Sbjct: 6 agtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtttc 65
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 66 ctactttatggatgagtgtac 86
>34312_dre-mir-142a:mirbase
Length = 91
Score = 65.9 bits (33), Expect = 4e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| || ||||||||||||||||||||||| || | || |||||||||||
Sbjct: 6 agtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtttc 65
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 66 ctactttatggatgagtgtac 86
>34313_dre-mir-142b:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| ||| ||||||||||| |||||||||| || || || |||||||||||
Sbjct: 3 agtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttc 62
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 63 ctactttatggatgagtgtac 83
>34750_tni-mir-142a:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 4e-12
Identities = 69/81 (85%)
Strand = Plus / Plus
Query: 1 agtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttc 60
||||||| || ||||||||||||||||||||||| || | || |||||||||||
Sbjct: 5 agtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtttc 64
Query: 61 ctactttatggatgagtgtac 81
|||||||||||||||||||||
Sbjct: 65 ctactttatggatgagtgtac 85
>34603_fru-mir-142a:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 50 tgtagtgtttcctactttatggatgagtgtac 81
||||||||||||||||||||||||||||||||
Sbjct: 52 tgtagtgtttcctactttatggatgagtgtac 83
>34751_tni-mir-142b:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 9 cacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctacttta 68
|||||||||||||||||||||||||| || | || |||||||||||||||||||
Sbjct: 11 cacccataaagtagaaagcactactaaacgtctttacacagtgtagtgtttcctacttta 70
Query: 69 tggatgagtg 78
||||||||||
Sbjct: 71 tggatgagtg 80
