miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39412_pab-MIR3710:mirbase
Length = 135
Score = 147 bits (74), Expect = 4e-36
Identities = 107/118 (90%)
Strand = Plus / Plus
Query: 89 gcttccagactctgttgggaacctgacgggcctccaaagtcttaacatgtccaattgctc 148
|||||||||||| ||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 5 gcttccagactcggttgggaacctgacgggcctccaaagtcttaaccttatctattgctc 64
Query: 149 cactctgcaagcgcttccagactcggttgggaacctgacgggcctcctaagtcttgac 206
| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 65 cgccctgcagacgcttccagactcggttgggaacctgacgggcctccaaagtcttgac 122
Score = 133 bits (67), Expect = 6e-32
Identities = 103/115 (89%)
Strand = Plus / Plus
Query: 17 gcttccagactcgtttgggaacctgacgggcctccaaagtcttaaaatgcacacttgctg 76
||||||||||||| ||||||||||||||||||||||||||||||| | | |||||
Sbjct: 5 gcttccagactcggttgggaacctgacgggcctccaaagtcttaaccttatctattgctc 64
Query: 77 cgctttgcagacgcttccagactctgttgggaacctgacgggcctccaaagtctt 131
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 65 cgccctgcagacgcttccagactcggttgggaacctgacgggcctccaaagtctt 119
Score = 93.7 bits (47), Expect = 6e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 9 ctgcagacgcttccagactcgtttgggaacctgacgggcctccaaagtctt 59
||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 69 ctgcagacgcttccagactcggttgggaacctgacgggcctccaaagtctt 119
>39450_pta-MIR1315:mirbase
Length = 192
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 168 gactcggttgggaacctgacgggcctcc 195
||||||||||||||||||||||||||||
Sbjct: 39 gactcggttgggaacctgacgggcctcc 12
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 96 gactctgttgggaacctgacgggcctccaaa 126
||||| |||||||||||||||||||||||||
Sbjct: 39 gactcggttgggaacctgacgggcctccaaa 9
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 24 gactcgtttgggaacctgacgggcctccaaa 54
|||||| ||||||||||||||||||||||||
Sbjct: 39 gactcggttgggaacctgacgggcctccaaa 9
Score = 50.1 bits (25), Expect = 7e-07
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 168 gactcggttgggaacctgacgggcctcctaagtcttg 204
|||||||||||||||||||| ||||||| ||| ||||
Sbjct: 111 gactcggttgggaacctgaccggcctccaaagccttg 75
Score = 48.1 bits (24), Expect = 3e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 24 gactcgtttgggaacctgacgggcctccaaag 55
|||||| ||||||||||||| |||||||||||
Sbjct: 111 gactcggttgggaacctgaccggcctccaaag 80
Score = 48.1 bits (24), Expect = 3e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 168 gactcggttgggaacctgacgggcctcc 195
|||||||||||||||||||| |||||||
Sbjct: 183 gactcggttgggaacctgacaggcctcc 156
Score = 46.1 bits (23), Expect = 1e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 24 gactcgtttgggaacctgacgggcctccaaa 54
|||||| ||||||||||||| ||||||||||
Sbjct: 183 gactcggttgggaacctgacaggcctccaaa 153
