miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;AARH01004262.1/367-494 3694:Populus trichocarpa
Length = 128
Score = 176 bits (89), Expect = 7e-44
Identities = 121/131 (92%), Gaps = 3/131 (2%)
Strand = Plus / Minus
Query: 28 agataagagcttgtttggtagccaaggacgacttgtccgccaccatcttagttagttcca 87
|||||||||| |||||||||||||||||||||||| || |||||||||||||| | ||||
Sbjct: 128 agataagagcctgtttggtagccaaggacgacttgcccaccaccatcttagttgggtcca 69
Query: 88 gtataatattactgggcaccttccatttggttttgggcaagcaccttggctaactgacaa 147
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 68 gtata---ttactgggcaccttccatttggttttgggcaagcaccttggctagctgacaa 12
Query: 148 gctcttatcaa 158
||||||||||
Sbjct: 11 actcttatcaa 1
>RF00645;MIR169_2;AARH01004261.1/78455-78341 3694:Populus
trichocarpa
Length = 115
Score = 151 bits (76), Expect = 4e-36
Identities = 108/118 (91%), Gaps = 3/118 (2%)
Strand = Plus / Plus
Query: 35 agcttgtttggtagccaaggacgacttgtccgccaccatcttagttagttccagtataat 94
|||||||||||||||||||||||||||| || |||||||||||||| | |||| ||||
Sbjct: 1 agcttgtttggtagccaaggacgacttgcccaccaccatcttagttgggtccaatata-- 58
Query: 95 attactgggcaccttccatttggttttgggcaagcaccttggctaactgacaagctct 152
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 59 -ttactgggcaccttccatttggttttgggcaagcaccttggctagctgacaaactct 115
>RF00865;MIR169_5;AARH01003347.1/60268-60395 3694:Populus
trichocarpa
Length = 128
Score = 58.0 bits (29), Expect = 4e-08
Identities = 97/119 (81%), Gaps = 3/119 (2%)
Strand = Plus / Minus
Query: 28 agataagagcttgtttggtagccaaggacgacttgtccgccaccatcttagttagttcca 87
|||||||| | ||||||| ||||||||| |||||| ||| || | |||||| | ||||||
Sbjct: 128 agataagatcatgtttggcagccaaggaagacttgcccgtcatcgtcttagctggttcca 69
Query: 88 gtataatattactgggcaccttccatttggttttgggcaagcaccttggctaactgaca 146
|| || ||||| ||||||| |||||||||||| |||||||||| ||| ||||||
Sbjct: 68 gtgta---ttacttagcaccttttgtttggttttggggaagcaccttgactagctgaca 13
>RF00865;MIR169_5;AARH01000583.1/30070-29928 3694:Populus
trichocarpa
Length = 143
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 cttgtttggtagccaaggacgacttg 62
||||||||||||||||||| ||||||
Sbjct: 133 cttgtttggtagccaaggatgacttg 108
>RF00865;MIR169_5;AC216452.1/111365-111227 3694:Populus trichocarpa
Length = 139
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 37 cttgtttggtagccaaggacgacttg 62
||||||||||||||||||| ||||||
Sbjct: 129 cttgtttggtagccaaggatgacttg 104
>RF00865;MIR169_5;AARH01004262.1/629-776 3694:Populus trichocarpa
Length = 148
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 37 cttgtttggtagccaaggacga 58
||||||||||||||||||||||
Sbjct: 138 cttgtttggtagccaaggacga 117
>RF00865;MIR169_5;AASG02003632.1/10304-10430 3988:Ricinus communis
(castor bean)
Length = 127
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 38 ttgtttggtagccaaggacgacttgtccgc 67
|||||||||||||||||| |||||| ||||
Sbjct: 116 ttgtttggtagccaaggatgacttgcccgc 87
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 cttgtttggtagccaaggacgacttg 62
||||||||||||||||||| ||||||
Sbjct: 4 cttgtttggtagccaaggatgacttg 29
>RF00645;MIR169_2;AC216452.1/111234-111359 3694:Populus
trichocarpa
Length = 126
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 cttgtttggtagccaaggacgacttg 62
||||||||||||||||||| ||||||
Sbjct: 4 cttgtttggtagccaaggatgacttg 29
>RF00645;MIR169_2;AARH01000583.1/29935-30064 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 37 cttgtttggtagccaaggacgacttg 62
||||||||||||||||||| ||||||
Sbjct: 4 cttgtttggtagccaaggatgacttg 29
