miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25804_xtr-mir-181a-2:mirbase
Length = 95
Score = 188 bits (95), Expect = 7e-49
Identities = 95/95 (100%)
Strand = Plus / Plus
Query: 17 ttgagggcttcagagaacattcaacgctgtcggtgagtttgagaaagtgtaaaaatataa 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgagggcttcagagaacattcaacgctgtcggtgagtttgagaaagtgtaaaaatataa 60
Query: 77 accatcggccgttgactgtaccctgaggcttttca 111
|||||||||||||||||||||||||||||||||||
Sbjct: 61 accatcggccgttgactgtaccctgaggcttttca 95
>25975_gga-mir-181a-2:mirbase
Length = 91
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttgagaa 61
||||||| |||||||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttgagaa 53
>26484_tgu-mir-181a-2:mirbase
Length = 73
Score = 69.9 bits (35), Expect = 4e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttgagaa 61
||||||| |||||||||||||||||||||||||||||||
Sbjct: 2 gcttcagtgaacattcaacgctgtcggtgagtttgagaa 40
>33244_bta-mir-181a-1:mirbase
Length = 110
Score = 63.9 bits (32), Expect = 3e-11
Identities = 68/78 (87%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttgagaaagtgtaaaaatataaaccatc 82
||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg-gaa---ttaaaaatcaaaaccatc 70
Query: 83 ggccgttgactgtaccct 100
| ||||||| ||||||||
Sbjct: 71 gaccgttgattgtaccct 88
>25974_gga-mir-181a-1:mirbase
Length = 104
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 11 gcttcagtgaacattcaacgctgtcggtgagtttg 45
>26483_tgu-mir-181a-1:mirbase
Length = 73
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 2 gcttcagtgaacattcaacgctgtcggtgagtttg 36
>27061_eca-mir-181a-2:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>27578_lla-mir-181a-1:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>27767_mml-mir-181a-1:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>28221_mne-mir-181a-1:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>28313_ggo-mir-181a-1:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>28483_hsa-mir-181a-1:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>30102_ppa-mir-181a-1:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>30251_ptr-mir-181a-1:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>30865_ppy-mir-181a-1:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 15 gcttcagtgaacattcaacgctgtcggtgagtttg 49
>31510_oan-mir-181a:mirbase
Length = 127
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 21 gcttcagtgaacattcaacgctgtcggtgagtttg 55
>31892_mmu-mir-181a-1:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 5 gcttcagtgaacattcaacgctgtcggtgagtttg 39
>32762_rno-mir-181a-1:mirbase
Length = 100
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 6 gcttcagtgaacattcaacgctgtcggtgagtttg 40
>33063_rno-mir-3570:mirbase
Length = 117
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 93 gcttcagtgaacattcaacgctgtcggtgagtttg 59
>34006_ssc-mir-181a-1:mirbase
Length = 104
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 gcttcagagaacattcaacgctgtcggtgagtttg 57
||||||| |||||||||||||||||||||||||||
Sbjct: 14 gcttcagtgaacattcaacgctgtcggtgagtttg 48
>34328_dre-mir-181a-1:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 26 tcagagaacattcaacgctgtcggtgagtttgag 59
|||| |||||||||||||||||||||||||||||
Sbjct: 8 tcagtgaacattcaacgctgtcggtgagtttgag 41
>27405_mdo-mir-181c:mirbase
Length = 72
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttgag 59
|||||||||||||||||||||||||||||
Sbjct: 6 gaacattcaacgctgtcggtgagtttgag 34
>34610_fru-mir-181a-1:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttgag 59
|||||||||||||||||||||||||||||
Sbjct: 13 gaacattcaacgctgtcggtgagtttgag 41
>34757_tni-mir-181a-1:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttgag 59
|||||||||||||||||||||||||||||
Sbjct: 13 gaacattcaacgctgtcggtgagtttgag 41
>25803_xtr-mir-181a-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 13 gaacattcaacgctgtcggtgagtttg 39
>27060_eca-mir-181a:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>27403_mdo-mir-181a:mirbase
Length = 64
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 2 gaacattcaacgctgtcggtgagtttg 28
>27620_sla-mir-181a-2:mirbase
Length = 112
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>27768_mml-mir-181a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>28222_mne-mir-181a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>28314_ggo-mir-181a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>28484_hsa-mir-181a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>30103_ppa-mir-181a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>30252_ptr-mir-181a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>30866_ppy-mir-181a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>31893_mmu-mir-181a-2:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 6 gaacattcaacgctgtcggtgagtttg 32
>32763_rno-mir-181a-2:mirbase
Length = 117
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>33245_bta-mir-181a-2:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 38 gaacattcaacgctgtcggtgagtttg 64
>34007_ssc-mir-181a-2:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 9 gaacattcaacgctgtcggtgagtttg 35
>34758_tni-mir-181a-2:mirbase
Length = 91
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagtttg 57
|||||||||||||||||||||||||||
Sbjct: 22 gaacattcaacgctgtcggtgagtttg 48
>25505_pma-mir-181a:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagttt 56
||||||||||||||||||||||||||
Sbjct: 8 gaacattcaacgctgtcggtgagttt 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 74 taaaccatcggccgttgactgtacc 98
|||||||||| ||||||||||||||
Sbjct: 49 taaaccatcgaccgttgactgtacc 73
>26731_cfa-mir-181a-1:mirbase
Length = 62
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 aacattcaacgctgtcggtgagtttg 57
||||||||||||||||||||||||||
Sbjct: 1 aacattcaacgctgtcggtgagtttg 26
>26732_cfa-mir-181a-2:mirbase
Length = 60
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 32 aacattcaacgctgtcggtgagtttg 57
||||||||||||||||||||||||||
Sbjct: 1 aacattcaacgctgtcggtgagtttg 26
>34329_dre-mir-181a-2:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagttt 56
||||||||||||||||||||||||||
Sbjct: 6 gaacattcaacgctgtcggtgagttt 31
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 75 aaaccatcggccgttgactgtaccctgagg 104
||||||||| ||||||||||||||||||||
Sbjct: 46 aaaccatcgaccgttgactgtaccctgagg 75
>34611_fru-mir-181a-2:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 31 gaacattcaacgctgtcggtgagttt 56
||||||||||||||||||||||||||
Sbjct: 21 gaacattcaacgctgtcggtgagttt 46
