miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32979_rno-mir-675:mirbase
Length = 84
Score = 135 bits (68), Expect = 5e-33
Identities = 74/77 (96%)
Strand = Plus / Plus
Query: 1 cggcccanggactggtgcggaaagggcccncantggacttggtgcactgtatgccctaac 60
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 3 cggcccagggactggtgcggaaagggcccacagtggacttggtgcactgtatgccctaac 62
Query: 61 cgctcagtccctgggtc 77
|||||||||||||||||
Sbjct: 63 cgctcagtccctgggtc 79
>32290_mmu-mir-675:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 cggcccanggactggtgcggaaagggcccncantggacttggtgcactgtatgccctaac 60
||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct: 3 cggcccagggactggtgcggaaagggcccacagtggacttggtacactgtatgccctaac 62
Query: 61 cgctcagtccctgggtc 77
|||||||||||||||||
Sbjct: 63 cgctcagtccctgggtc 79
>32291_mmu-mir-675:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 73/77 (94%)
Strand = Plus / Plus
Query: 1 cggcccanggactggtgcggaaagggcccncantggacttggtgcactgtatgccctaac 60
||||||| ||||||||||||||||||||| || |||||||||| ||||||||||||||||
Sbjct: 3 cggcccagggactggtgcggaaagggcccacagtggacttggtacactgtatgccctaac 62
Query: 61 cgctcagtccctgggtc 77
|||||||||||||||||
Sbjct: 63 cgctcagtccctgggtc 79
>28110_mml-mir-675:mirbase
Length = 73
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 cccanggactggtgcggaaagggcccncantggacttggtg-cactgtatgccctaaccg 62
|||| || |||||||||| ||||||| || ||||||||||| ||||||||||||| ||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacactgtatgccctcaccg 60
Query: 63 ctcagtccctggg 75
||||| |||||||
Sbjct: 61 ctcagcccctggg 73
>31236_ppy-mir-675b:mirbase
Length = 95
Score = 77.8 bits (39), Expect = 1e-15
Identities = 67/76 (88%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 cggcccanggactggtgcggaaagggcccncantggacttggtg-cactgtatgccctaa 59
||||||| || |||||||||| ||||||| || ||||||||||| | ||||||||||| |
Sbjct: 11 cggcccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctca 70
Query: 60 ccgctcagtccctggg 75
|||||||| |||||||
Sbjct: 71 ccgctcagcccctggg 86
>28990_hsa-mir-675:mirbase
Length = 73
Score = 71.9 bits (36), Expect = 6e-14
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 cccanggactggtgcggaaagggcccncantggacttggtg-cactgtatgccctaaccg 62
|||| || |||||||||| ||||||| || ||||||||||| | ||||||||||| ||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 60
Query: 63 ctcagtccctggg 75
||||| |||||||
Sbjct: 61 ctcagcccctggg 73
>31235_ppy-mir-675a:mirbase
Length = 73
Score = 71.9 bits (36), Expect = 6e-14
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 cccanggactggtgcggaaagggcccncantggacttggtg-cactgtatgccctaaccg 62
|||| || |||||||||| ||||||| || ||||||||||| | ||||||||||| ||||
Sbjct: 1 cccagggtctggtgcggagagggcccacagtggacttggtgacgctgtatgccctcaccg 60
Query: 63 ctcagtccctggg 75
||||| |||||||
Sbjct: 61 ctcagcccctggg 73
>27256_eca-mir-675:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 60/73 (82%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 cccanggactggtgcggaaagggcccncantggacttggtg-cactgtatgccctaaccg 62
|||| || |||| ||||| ||||||| || || ||| ||| ||||||||||| | ||||
Sbjct: 1 cccaggggctggcgcggagagggcccacagtgcactcagtgacactgtatgccttcaccg 60
Query: 63 ctcagtccctggg 75
||||| |||||||
Sbjct: 61 ctcagcccctggg 73
