miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01960;SSU_rRNA_eukarya;AY557456.1/648-2413 61702:Cirrothauma
murrayi
Length = 1766
Score = 67.9 bits (34), Expect = 7e-12
Identities = 41/42 (97%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 2 gtcgcatgctcc-ggccgccatggcggccgcgggaattcgat 42
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1350 gtcgcatgctcccggccgccatggcggccgcgggaattcgat 1309
>RF01960;SSU_rRNA_eukarya;AJ133413.1/2-1645 89735:unidentified
myxozoan parasite
Length = 1644
Score = 56.0 bits (28), Expect = 3e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 gccgccatggcggccgcgggaattcgat 42
||||||||||||||||||||||||||||
Sbjct: 1 gccgccatggcggccgcgggaattcgat 28
>RF00177;SSU_rRNA_bacteria;AM500850.1/1-1425 77133:uncultured
bacterium
Length = 1425
Score = 46.1 bits (23), Expect = 3e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 3 tcgcatgctccggccgccatggc 25
|||||||||||||||||||||||
Sbjct: 1413 tcgcatgctccggccgccatggc 1391
>RF00177;SSU_rRNA_bacteria;FM206302.1/1-1247 77133:uncultured
bacterium
Length = 1247
Score = 46.1 bits (23), Expect = 3e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 20 catggcggccgcgggaattcgat 42
|||||||||||||||||||||||
Sbjct: 1247 catggcggccgcgggaattcgat 1225
