miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 129 bits (65), Expect = 7e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacacttctgcacaaactcgattttgatgccagtgtgcggaaatgcttc 74
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgattttgatgccagtgtgcagaaatgcttc 60
Query: 75 tgctacatt 83
|||||||||
Sbjct: 61 tgctacatt 69
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 81.8 bits (41), Expect = 1e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacacttctgcacaaactcgattttgatgccagtgtgcggaaatgcttc 74
||||||||||||||||||||||||||||| |||| || |||||||||||| ||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggatacagtgtgcggaagtgcttc 60
Query: 75 tgctacatt 83
|||||||||
Sbjct: 61 tgctacatt 69
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacacttctgcacaaactcgattttga-tgccagtgtgcggaaatgctt 73
||||||||||||||| ||| ||||| |||||||| || || |||||||||||| |||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 74 ctgctacatt 83
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacacttctgcacaaactcgattt-tgatgccagtgtgcggaaatgctt 73
|||||||||||| |||||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 74 ctgctacatt 83
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAFC03018591.1/6229-6298 9913:Bos taurus (cattle)
Length = 70
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 22 tggaaacacttctgcacaaactcgatt-ttgatgccagtgtgcggaaatgcttctgctac 80
|||||||| |||||||||||||||||| | ||| ||| ||||| |||||||| ||||||
Sbjct: 8 tggaaacatttctgcacaaactcgattatggataccaatgtgccaaaatgcttttgctac 67
Query: 81 att 83
|||
Sbjct: 68 att 70
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 49 ttgatgccagtgtgcggaaatgcttctgctacatt 83
|||| ||||||||| ||||||||||||||||||||
Sbjct: 38 ttgaagccagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 cagtgtgcggaaatgcttctgctacatt 83
|||||||| |||||||||||||||||||
Sbjct: 43 cagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 cagtgtgcggaaatgcttctgctacatt 83
||||||||||||||||||||| ||||||
Sbjct: 41 cagtgtgcggaaatgcttctggtacatt 68
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 ccagtgtgcggaaatgcttctgctaca 81
|||||||| ||||||||||||||||||
Sbjct: 41 ccagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 cagtgtgcggaaatgcttctgct 78
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 cagtgtgcggaaatgcttctgct 78
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 agtgtgcggaaatgcttctgctacat 82
|||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
