miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 125 bits (63), Expect = 1e-28
Identities = 81/87 (93%)
Strand = Plus / Minus
Query: 17 atcaatgcacagctacagctggttgaaggggaccaaatccatccaacagctgatttggtt 76
|||||||| ||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 87 atcaatgcgcagctacagctggttgaaggggaccaaatccatagaatagttgatttggtt 28
Query: 77 ccattttaccagcttcagcaaagcatt 103
||||||||||||||| |||||||||||
Sbjct: 27 ccattttaccagctttagcaaagcatt 1
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 115 bits (58), Expect = 1e-25
Identities = 79/86 (91%)
Strand = Plus / Minus
Query: 18 tcaatgcacagctacagctggttgaaggggaccaaatccatccaacagctgatttggttc 77
||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 86 tcaatgcgcagctacagctggttgaaggggaccaaatccagtgagcagccgatttggttc 27
Query: 78 cattttaccagcttcagcaaagcatt 103
||||| ||||||||||||||||||||
Sbjct: 26 catttgaccagcttcagcaaagcatt 1
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 105 bits (53), Expect = 1e-22
Identities = 77/85 (90%)
Strand = Plus / Minus
Query: 18 tcaatgcacagctacagctggttgaaggggaccaaatccatccaacagctgatttggttc 77
||||||| |||||||||||||||||||||||||||||||||| || || ||| ||||||
Sbjct: 86 tcaatgcgcagctacagctggttgaaggggaccaaatccatcatacggccgatctggttc 27
Query: 78 cattttaccagcttcagcaaagcat 102
||||||||||||| ||||||||||
Sbjct: 26 cattttaccagctctagcaaagcat 2
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 85.7 bits (43), Expect = 1e-16
Identities = 70/79 (88%)
Strand = Plus / Minus
Query: 20 aatgcacagctacagctggttgaaggggaccaaatccatccaacagctgatttggttcca 79
||||||||||||||||||||||||||||||||||||| | |||| ||| ||||||
Sbjct: 84 aatgcacagctacagctggttgaaggggaccaaatccgtgtaacaatcgatctggttctc 25
Query: 80 ttttaccagcttcagcaaa 98
|||||||||||||||||||
Sbjct: 24 ttttaccagcttcagcaaa 6
>RF00446;mir-133;CAAE01007044.1/175-261 99883:Tetraodon nigroviridis
Length = 87
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 35 ctggttgaaggggaccaaatccatccaacagctgatttggttccattttaccagcttcag 94
||||||||||||||||||||||| || || ||| ||||||||||| ||||||| |||
Sbjct: 69 ctggttgaaggggaccaaatccagacagaaggagatctggttccatttgaccagctgcag 10
Query: 95 caaagcatt 103
|||||||||
Sbjct: 9 caaagcatt 1
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 31 acagctggttgaaggggaccaaatcca 57
|||||||||||||||||||||||||||
Sbjct: 73 acagctggttgaaggggaccaaatcca 47
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||||
Sbjct: 61 gctacagctggttgaaggggaccaaat 35
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||||
Sbjct: 96 gctacagctggttgaaggggaccaaat 70
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||||
Sbjct: 94 gctacagctggttgaaggggaccaaat 68
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||||
Sbjct: 81 gctacagctggttgaaggggaccaaat 55
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||||
Sbjct: 78 gctacagctggttgaaggggaccaaat 52
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||||
Sbjct: 75 gctacagctggttgaaggggaccaaat 49
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||||
Sbjct: 76 gctacagctggttgaaggggaccaaat 50
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||||
Sbjct: 75 gctacagctggttgaaggggaccaaat 49
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 32 cagctggttgaaggggaccaaatcca 57
||||||||||||||||||||||||||
Sbjct: 71 cagctggttgaaggggaccaaatcca 46
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 29 ctacagctggttgaaggggaccaaat 54
||||||||||||||||||||||||||
Sbjct: 78 ctacagctggttgaaggggaccaaat 53
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 29 ctacagctggttgaaggggaccaaat 54
||||||||||||||||||||||||||
Sbjct: 77 ctacagctggttgaaggggaccaaat 52
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 29 ctacagctggttgaaggggaccaaat 54
||||||||||||||||||||||||||
Sbjct: 79 ctacagctggttgaaggggaccaaat 54
>RF00446;mir-133;AAGJ02035428.1/18887-18799
7668:Strongylocentrotus purpuratus
Length = 89
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaatcc 56
||||| |||||||||||||||||||||||
Sbjct: 78 gctacggctggttgaaggggaccaaatcc 50
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 30 tacagctggttgaaggggaccaaat 54
|||||||||||||||||||||||||
Sbjct: 75 tacagctggttgaaggggaccaaat 51
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 acagctggttgaaggggaccaaat 54
||||||||||||||||||||||||
Sbjct: 94 acagctggttgaaggggaccaaat 71
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 acagctggttgaaggggaccaaat 54
||||||||||||||||||||||||
Sbjct: 70 acagctggttgaaggggaccaaat 47
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 31 acagctggttgaaggggaccaaat 54
||||||||||||||||||||||||
Sbjct: 93 acagctggttgaaggggaccaaat 70
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 32 cagctggttgaaggggaccaaa 53
||||||||||||||||||||||
Sbjct: 77 cagctggttgaaggggaccaaa 56
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 28 gctacagctggttgaaggggaccaaa 53
|||| |||||||||||||||||||||
Sbjct: 77 gctatagctggttgaaggggaccaaa 52
