miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 129 bits (65), Expect = 9e-30
Identities = 89/97 (91%)
Strand = Plus / Minus
Query: 11 tactccctctgttccaaaatagatgacccaattttatactaattttttactaaagttagt 70
||||||||| ||||||||||||||||||||| ||| |||||| ||| || ||||||||||
Sbjct: 101 tactccctccgttccaaaatagatgacccaactttttactaactttatattaaagttagt 42
Query: 71 acaaagttgagtcatctatttcggaacggagggagta 107
| ||||||||||||||||||| |||||||||||||||
Sbjct: 41 ataaagttgagtcatctattttggaacggagggagta 5
Score = 105 bits (53), Expect = 1e-22
Identities = 86/97 (88%)
Strand = Plus / Plus
Query: 11 tactccctctgttccaaaatagatgacccaattttatactaattttttactaaagttagt 70
||||||||| ||||||||||||||||| ||| |||||||||| ||| ||||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttatactaactttaatataaagttagt 64
Query: 71 acaaagttgagtcatctatttcggaacggagggagta 107
| ||||||| ||||||||||| |||||||||||||||
Sbjct: 65 aaaaagttgggtcatctattttggaacggagggagta 101
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 129 bits (65), Expect = 9e-30
Identities = 89/97 (91%)
Strand = Plus / Plus
Query: 11 tactccctctgttccaaaatagatgacccaattttatactaattttttactaaagttagt 70
||||||||| ||||||||||||||||| ||| ||| |||||||||| ||||| |||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactttgtactaattttgtactatagttagt 64
Query: 71 acaaagttgagtcatctatttcggaacggagggagta 107
||||||||||||||||||||| ||||||||||||||
Sbjct: 65 acaaagttgagtcatctattttagaacggagggagta 101
Score = 83.8 bits (42), Expect = 5e-16
Identities = 86/98 (87%), Gaps = 2/98 (2%)
Strand = Plus / Minus
Query: 11 tactccctctgttccaaaatagatgacccaattttatactaattttt-tactaaagttag 69
||||||||| |||| |||||||||||| ||| ||| |||||| | | ||| ||| ||||
Sbjct: 101 tactccctccgttctaaaatagatgactcaactttgtactaactatagtacaaaa-ttag 43
Query: 70 tacaaagttgagtcatctatttcggaacggagggagta 107
|||||||||||||||||||||| |||||||||||||||
Sbjct: 42 tacaaagttgagtcatctattttggaacggagggagta 5
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 91.7 bits (46), Expect = 2e-18
Identities = 49/50 (98%)
Strand = Plus / Minus
Query: 59 actaaagttagtacaaagttgagtcatctatttcggaacggagggagtat 108
||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 53 actaaagttagtacaaagttgagtcatctattttggaacggagggagtat 4
Score = 54.0 bits (27), Expect = 4e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 10 atactccctctgttccaaaatagatgacccaattttatactaa 52
|||||||||| ||||||||||||||||| ||| ||| ||||||
Sbjct: 4 atactccctccgttccaaaatagatgactcaactttgtactaa 46
Score = 54.0 bits (27), Expect = 4e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 73 aaagttgagtcatctatttcggaacggagggagta 107
||||||| ||||||||||| |||||||||||||||
Sbjct: 56 aaagttgggtcatctattttggaacggagggagta 90
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 87.7 bits (44), Expect = 3e-17
Identities = 50/52 (96%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagtata 109
|||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 41 tactaaagttagtacaaagttgagtcatctattttggaatggagggagtata 92
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 66 ttagtacaaagttgagtcatctatttcggaacggagggagta 107
|||||||||||||| ||||||||||| |||| ||||| ||||
Sbjct: 46 ttagtacaaagttgggtcatctattttggaatggaggaagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 9 tatactccctctgttccaaaatagatgacccaattttatactaa 52
||||||||||| |||||||||||||||| ||| ||| ||||||
Sbjct: 92 tatactccctccattccaaaatagatgactcaactttgtactaa 49
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 81.8 bits (41), Expect = 2e-15
Identities = 50/53 (94%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagtataa 110
|||||||||||||||||||||||||||||||||| | |||||||| |||||||
Sbjct: 41 tactaaagttagtacaaagttgagtcatctattttgaaacggaggaagtataa 93
Score = 60.0 bits (30), Expect = 7e-09
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 66 ttagtacaaagttgagtcatctatttcggaacggagggagta 107
|||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 46 ttagtacaaagttgggtcatctattttggaacggaaggagta 5
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 73.8 bits (37), Expect = 4e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 67 tagtacaaagttgagtcatctatttcggaacggagggagtataaa 111
||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 24 tagtacaaagttgggtcatctattttggaacggagggagtataaa 68
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 9 tatactccctctgttccaaaatagatgacccaattttatacta 51
||||||||||| ||||||||||||||||||||| ||| |||||
Sbjct: 66 tatactccctccgttccaaaatagatgacccaactttgtacta 24
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 67.9 bits (34), Expect = 3e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
|||||||| ||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 41 tactaaagatagtacaaagttgagtcgtctattttagaacggagggagta 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 66 ttagtacaaagttgagtcatctattt 91
||||||||||||||||||||||||||
Sbjct: 46 ttagtacaaagttgagtcatctattt 21
>RF00906;MIR1122;U29095.1/333-439 4565:Triticum aestivum (bread
wheat)
Length = 107
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 66 ttagtacaaagttgagtcatctatttcggaacggagggagtataa 110
||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 62 ttagtacaaagttgagtcacttatttcgggacggagggagtataa 106
Score = 50.1 bits (25), Expect = 6e-06
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 9 tatactccctctgttccaaaatagatgacccaattttatactaattttttactaaagtta 68
||||||||||| || || ||||| |||| ||| ||| |||||||||| ||||||| ||
Sbjct: 105 tatactccctccgtcccgaaataagtgactcaactttgtactaattttgtactaaaaata 46
Query: 69 gtacaaagttgag 81
||| |||||||||
Sbjct: 45 gtataaagttgag 33
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 63.9 bits (32), Expect = 4e-10
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 72 caaagttgagtcatctatttcggaacggagggagta 107
|||||||||||||||||||| |||||||||||||||
Sbjct: 40 caaagttgagtcatctattttggaacggagggagta 5
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 72 caaagttgagtcatctatttcggaacggagggagt 106
|||||||||||||||||||| ||||||||||||||
Sbjct: 41 caaagttgagtcatctattttggaacggagggagt 75
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 tactccctctgttccaaaatagatgac 37
||||||||| |||||||||||||||||
Sbjct: 5 tactccctccgttccaaaatagatgac 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 actccctctgttccaaaatagatgac 37
|||||||| |||||||||||||||||
Sbjct: 75 actccctccgttccaaaatagatgac 50
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 61 taaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
|||||||| |||||||||| ||||||||||| |||||||| ||||||
Sbjct: 51 taaagttaatacaaagttgggtcatctattttggaacggaaggagta 5
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 61 taaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
|||||||| |||||||||| ||||||||||| | |||||| ||||||
Sbjct: 70 taaagttaatacaaagttgggtcatctattttgaaacggaaggagta 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 tactccctctgttccaaaatagatgacccaa 41
|||||| || |||||||||||||||||||||
Sbjct: 5 tactccttccgttccaaaatagatgacccaa 35
>RF00906;MIR1122;FJ374625.1/3001-2870 4573:Aegilops speltoides
Length = 132
Score = 61.9 bits (31), Expect = 2e-09
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 62 aaagttagtacaaagttgagtcatctatttcggaacggagggagtat 108
||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct: 50 aaagttagtacaaagttgagtcacttattttgggacggagggagtat 4
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 60 ctaaagttagtacaaagttgagtca 84
|||||||||||||||||||||||||
Sbjct: 81 ctaaagttagtacaaagttgagtca 105
>RF00906;MIR1122;EU282250.1/1190-1294 52152:Elymus repens
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
||||||||||| |||||||||||| ||| ||||| || ||||||||||||
Sbjct: 52 tactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;EU282239.1/1196-1300 52152:Elymus repens
Length = 105
Score = 60.0 bits (30), Expect = 7e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
||||||||||| |||||||||||| ||| ||||| || ||||||||||||
Sbjct: 52 tactaaagttaatacaaagttgagacatttattttgggacggagggagta 101
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 58.0 bits (29), Expect = 3e-08
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagtataa 110
|||||||||||||||||| ||||| || ||||| || |||||||||||||||
Sbjct: 100 tactaaagttagtacaaacttgagacagttattttgggacggagggagtataa 152
>RF00906;MIR1122;AF521177.1/81577-81474 4513:Hordeum vulgare
Length = 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 66 ttagtacaaagttgagtcatctatttcggaacggagggagtataa 110
||||||||||||||||||| ||||| || |||||||||||||||
Sbjct: 59 ttagtacaaagttgagtcacttattttgggacggagggagtataa 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 58 tactaaagttagtacaaagttgagtc 83
||||||||||||| ||||||||||||
Sbjct: 64 tactaaagttagtgcaaagttgagtc 39
>RF00906;MIR1122;EU282755.1/953-849 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 56.0 bits (28), Expect = 1e-07
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 50 taattttttactaaagttagtacaaagttgagtcatctatttcggaacggagggagtata 109
||||||| ||||| || ||||||||||||||| || ||||| || ||||||||||||||
Sbjct: 44 taattttgtactacagctagtacaaagttgagacacttattttgggacggagggagtata 103
>RF00906;MIR1122;AY821694.1/1308-1197 37674:Crithopsis delileana
Length = 112
Score = 54.0 bits (27), Expect = 4e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagtat 108
|||||||||||||||||||||||| || ||||| || | |||||||||||
Sbjct: 59 tactaaagttagtacaaagttgagacacttattttgggatggagggagtat 109
>RF00906;MIR1122;AF521177.1/206122-206018 4513:Hordeum vulgare
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
||||| || ||||||||||||||| ||| ||||| | |||||||||||||
Sbjct: 52 tactagagctagtacaaagttgagacatttattttgaaacggagggagta 101
>RF00906;MIR1122;FJ477093.1/40908-41001 4513:Hordeum vulgare
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
|||||||||||||| |||||||||||| || || || ||||||||||||
Sbjct: 41 tactaaagttagtataaagttgagtcacttaatttgggacggagggagta 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 66 ttagtacaaagttgagtcatctatttcggaacggagggagtata 109
||||||||||||||||||| ||||| || || |||||||||||
Sbjct: 46 ttagtacaaagttgagtcacttattttgggacagagggagtata 3
>RF00906;MIR1122;FJ236275.1/674-570 4573:Aegilops speltoides
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
||||||||||||||||||||| || || ||||| || ||||||||||||
Sbjct: 52 tactaaagttagtacaaagttaagacacttattttgggacggagggagta 101
>RF00906;MIR1122;FJ374624.1/2920-2820 4572:Triticum urartu
Length = 101
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 60 ctaaagttagtacaaagttgagtca 84
|||||||||||||||||||||||||
Sbjct: 52 ctaaagttagtacaaagttgagtca 28
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 aagttagtacaaagttgagtca 84
||||||||||||||||||||||
Sbjct: 53 aagttagtacaaagttgagtca 74
>RF00906;MIR1122;FJ491378.1/4581-4466 4550:Secale cereale (rye)
Length = 116
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 tactaaagttagtacaaagttgagt 82
|||||||||||||||||||||||||
Sbjct: 65 tactaaagttagtacaaagttgagt 41
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 51 aattttttactaaagttagtacaaagttgagtcatctatttcggaacggagggagta 107
|||||| ||||| || ||||||||||||||| || ||||| || ||||||||||||
Sbjct: 45 aattttgtactagagctagtacaaagttgagacagttattttgggacggagggagta 101
>RF00906;MIR1122;DQ445236.1/13423-13319 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 58 tactaaagttagtacaaagttgagtcatctatttcggaacggagggagtataa 110
||||| || ||||||||| ||||| || ||||| ||||||||||||||||||
Sbjct: 54 tactagagctagtacaaatttgagacacttattttggaacggagggagtataa 2
>RF00906;MIR1122;EU379326.1/1838-1972 269377:Poa palustris
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 80 agtcatctatttcggaacggagggagtataa 110
||||||||| || ||||||||||||||||||
Sbjct: 32 agtcatctaatttggaacggagggagtataa 2
>RF00906;MIR1122;FJ184990.1/3303-3406 4565:Triticum aestivum (bread
wheat)
Length = 104
Score = 44.1 bits (22), Expect = 4e-04
Identities = 50/58 (86%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 51 aattttttactaaagttagtacaaagttgagtcatctatttcggaacggagggagtat 108
|||||| ||||| ||||||||||||| |||| || ||||| || |||||||||||||
Sbjct: 45 aattttatactagagttagtacaaag-tgagacacttattttgggacggagggagtat 101
>RF00906;MIR1122;AF427791.1/40179-40064 4513:Hordeum vulgare
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 77 ttgagtcatctatttcggaacggagggagtataa 110
|||| |||| ||| ||||||||||||||||||||
Sbjct: 82 ttgaatcatttatctcggaacggagggagtataa 115
