miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AF091802.1/1995-2099 37682:Aegilops tauschii
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 85 tactactccctccgttctaaaatacatgactcaactt 121
|||||||||||||||||||||||| ||||||||||||
Sbjct: 104 tactactccctccgttctaaaatagatgactcaactt 68
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 88 tactccctccgttctaaaatacatgactcaactt 121
|||||||||||||| |||||| ||||||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactt 38
>RF00906;MIR1122;U76215.1/3218-3297 4565:Triticum aestivum (bread
wheat)
Length = 80
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 88 tactccctccgttctaaaatacatgactcaactt 121
|||||||||||||| |||||| ||||||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactt 38
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 89 actccctccgttctaaaatacatgactcaactt 121
||||||||||||| |||||| ||||||||||||
Sbjct: 75 actccctccgttccaaaatagatgactcaactt 43
>RF00906;MIR1122;DQ871219.1/88217-88124 85692:Triticum turgidum
subsp. dicoccoides
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 88 tactccctccgttctaaaatacatgactcaactt 121
||||||||||||||||||||| | ||||||||||
Sbjct: 90 tactccctccgttctaaaatagacgactcaactt 57
>RF00906;MIR1122;EU626553.1/80133-80237 4572:Triticum urartu
Length = 105
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 88 tactccctccgttctaaaatacatgactcaactt 121
|||||||||||||| |||||| ||||||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactt 38
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tccaaaatagatgacccaactttatacta 29
||||||||||||||| |||||||||||||
Sbjct: 17 tccaaaatagatgactcaactttatacta 45
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 tccaaaatagatgacccaactttatacta 29
||||||||||||||||||||||| |||||
Sbjct: 89 tccaaaatagatgacccaactttttacta 61
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 124 tagtataaagttgagtcatgtatttt 149
||||||||||||||||||| ||||||
Sbjct: 45 tagtataaagttgagtcatctatttt 20
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 88 tactccctccgttctaaaatacatgactcaactt 121
|||||||||||||| |||||| ||||| ||||||
Sbjct: 101 tactccctccgttccaaaatagatgacccaactt 68
>RF00906;MIR1122;DQ537335.1/8332-8425 4565:Triticum aestivum (bread
wheat)
Length = 94
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 88 tactccctccgttctaaaatacatgactcaactt 121
|||||||||||||| |||||| ||||||||||||
Sbjct: 5 tactccctccgttccaaaatagatgactcaactt 38
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 tccaaaatagatgacccaactttatacta 29
|||||||||||||||||||||||| ||||
Sbjct: 78 tccaaaatagatgacccaactttacacta 50
Score = 50.1 bits (25), Expect = 9e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 85 tactactccctccgttctaaaatacatgactcaactt 121
||||||||||||||||| |||||| ||||| ||||||
Sbjct: 93 tactactccctccgttccaaaatagatgacccaactt 57
>RF00906;MIR1122;DQ154924.1/3536-3603 4571:Triticum turgidum
Length = 68
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 1 tccaaaatagatgacccaactttatacta 29
||||||||||||||||||||||| |||||
Sbjct: 52 tccaaaatagatgacccaactttgtacta 24
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 88 tactccctccgttctaaaatacatgactcaactt 121
|||||||||||||| |||||| ||||| ||||||
Sbjct: 64 tactccctccgttccaaaatagatgacccaactt 31
>RF00906;MIR1122;AF488415.1/128685-128592 4568:Triticum monococcum
Length = 94
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tccaaaatagatgacccaactttatacta 29
||||||||||||||||||||||| |||||
Sbjct: 17 tccaaaatagatgacccaactttgtacta 45
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 88 tactccctccgttctaaaatacatgactcaactt 121
|||||||||| ||| |||||| ||||||||||||
Sbjct: 90 tactccctccattccaaaatagatgactcaactt 57
>RF00906;MIR1122;AF325197.1/3732-3639 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 tccaaaatagatgacccaactttatacta 29
||||||||||||||||||||||| |||||
Sbjct: 17 tccaaaatagatgacccaactttgtacta 45
>RF00906;MIR1122;CT832702.1/1285-1384 39946:Oryza sativa Indica
Group
Length = 100
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 84 ttactactccctccgttctaaaata 108
|||||||||||||||||||||||||
Sbjct: 1 ttactactccctccgttctaaaata 25
>RF00906;MIR1122;AAAA02015207.1/7418-7517 39946:Oryza sativa Indica
Group
Length = 100
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 84 ttactactccctccgttctaaaata 108
|||||||||||||||||||||||||
Sbjct: 100 ttactactccctccgttctaaaata 76
>RF00906;MIR1122;FJ436986.1/109208-109327 37682:Aegilops tauschii
Length = 120
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tccaaaatagatgacccaacttt 23
|||||||||||||||||||||||
Sbjct: 17 tccaaaatagatgacccaacttt 39
>RF00906;MIR1122;AAAA02032192.1/8285-8403 39946:Oryza sativa Indica
Group
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 actactccctccgttctaaaata 108
|||||||||||||||||||||||
Sbjct: 3 actactccctccgttctaaaata 25
>RF00906;MIR1122;AACV01023162.1/1695-1577 39947:Oryza sativa
Japonica Group
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 86 actactccctccgttctaaaata 108
|||||||||||||||||||||||
Sbjct: 3 actactccctccgttctaaaata 25
>RF00906;MIR1122;AAAA02006989.1/4212-4341 39946:Oryza sativa Indica
Group
Length = 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 ctactccctccgttctaaaata 108
||||||||||||||||||||||
Sbjct: 4 ctactccctccgttctaaaata 25
