miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY146587.2/148630-148744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 145 bits (73), Expect = 2e-34
Identities = 94/101 (93%)
Strand = Plus / Minus
Query: 16 ctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctagat 75
|||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||
Sbjct: 105 ctccgtttcgaattatttgtcataggtatgaatgtatctagatttattttaattctagat 46
Query: 76 acatccatttctgcgacgagtaatttagaacggagggagta 116
|||| ||||||||| ||||||||||||||||| ||| ||||
Sbjct: 45 acattcatttctgcaacgagtaatttagaacgaaggaagta 5
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 127 bits (64), Expect = 4e-29
Identities = 95/104 (91%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 13 cccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattcta 72
|||||||||| ||| ||| ||||| || ||||||||||||||||||||||||| |||||
Sbjct: 8 cccctccgttccga-ttacttgtctcacatatggatgtatctagatgtattttagttcta 66
Query: 73 gatacatccatttctgcgacgagtaatttagaacggagggagta 116
|||||||||||||| |||||||||||||| ||||||||||||||
Sbjct: 67 gatacatccatttcagcgacgagtaatttggaacggagggagta 110
>RF00906;MIR1122;AY013754.1/1932-2046 37682:Aegilops tauschii
Length = 115
Score = 127 bits (64), Expect = 4e-29
Identities = 82/88 (93%)
Strand = Plus / Minus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctag 73
||||||||| ||||||| ||||| || |||||||||||||||||||||||||| ||||||
Sbjct: 107 ccctccgttccgaattacttgtcgcacgtatggatgtatctagatgtattttagttctag 48
Query: 74 atacatccatttctgcgacgagtaattt 101
||||||||||||| ||||||||||||||
Sbjct: 47 atacatccatttcagcgacgagtaattt 20
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggagggagta 116
||||||||||||||| |||||| ||||||| ||||||||||||||
Sbjct: 64 tctagatacatccatacgtgcgacaagtaattcggaacggagggagta 111
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 123 bits (62), Expect = 6e-28
Identities = 71/74 (95%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttaattctagatacatccatttctgcgacgagtaattta 102
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatccatttctgcgacgagtaatttg 97
Query: 103 gaacggagggagta 116
||||||||||||||
Sbjct: 98 gaacggagggagta 111
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggaggga 113
||||||||||||||||| | ||||||||||| |||||||||||
Sbjct: 52 tctagatacatccatttattggacgagtaattcggaacggaggga 8
>RF00906;MIR1122;X13580.1/135-24 4565:Triticum aestivum (bread
wheat)
Length = 112
Score = 113 bits (57), Expect = 6e-25
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctag 73
||||||||||||||||||| ||| ||| || ||||||||||| ||||||||| ||||||
Sbjct: 9 ccctccgtttcgaattattcgtcgcagaaatagatgtatctagttgtattttagttctag 68
Query: 74 atacatccatttctgcgacgagtaattta 102
|||||| ||||||||||||||||||||||
Sbjct: 69 atacattcatttctgcgacgagtaattta 97
Score = 54.0 bits (27), Expect = 4e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 70 ctagatacatccatttctgcgacgagtaatttagaacggagggagta 116
||||||||||| ||||||||||||| ||||| |||||||||||||
Sbjct: 51 ctagatacatctatttctgcgacgaataattcgaaacggagggagta 5
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctag 73
||||||||| |||||| | ||| ||| |||||||||||||||||||||||| || |||
Sbjct: 9 ccctccgttctgaattactcgtcgcagaaatggatgtatctagatgtattttagttttag 68
Query: 74 atacatccatttctgcgacgagtaatttagaacggagggag 114
||| ||||||||||| |||||||||||| ||||||||||||
Sbjct: 69 atatatccatttctgagacgagtaatttggaacggagggag 109
Score = 87.7 bits (44), Expect = 3e-17
Identities = 47/48 (97%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggagggagta 116
|||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 52 tctagatacatccatttctgcgacgagtaattcagaacggagggagta 5
>RF00906;MIR1122;BT009295.1/1923-1809 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 95.6 bits (48), Expect = 1e-19
Identities = 78/88 (88%)
Strand = Plus / Minus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctag 73
||||||||| ||||||| ||||| || |||||||||||| |||||||||||| ||||||
Sbjct: 107 ccctccgttccgaattacttgtcgcacttatggatgtatcaagatgtattttagttctag 48
Query: 74 atacatccatttctgcgacgagtaattt 101
|||||||||||| |||||||||||||
Sbjct: 47 atacatccattttaacgacgagtaattt 20
>RF00906;MIR1122;EF081030.1/6132-5986 4572:Triticum urartu
Length = 147
Score = 87.7 bits (44), Expect = 3e-17
Identities = 77/88 (87%)
Strand = Plus / Plus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctag 73
|||| |||| ||||||| ||||||||| |||| || ||| || |||||||||| ||||||
Sbjct: 9 cccttcgttccgaattacttgtcacagatatgaatatatataaatgtattttagttctag 68
Query: 74 atacatccatttctgcgacgagtaattt 101
||| || |||||||||||||||||||||
Sbjct: 69 atatattcatttctgcgacgagtaattt 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatct 54
||||||||| ||||||| ||||| |||||||||||||||||
Sbjct: 139 ccctccgttccgaattacttgtcgcaggtatggatgtatct 99
Score = 50.1 bits (25), Expect = 7e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 72 agatacatccatttctgcgacgagtaatttagaacggagggagta 116
|||||||||||| ||||||| ||||||| ||||||||||||||
Sbjct: 99 agatacatccatacctgcgacaagtaattcggaacggagggagta 143
>RF00906;MIR1122;AY491681.1/88752-88866 4568:Triticum monococcum
Length = 115
Score = 87.7 bits (44), Expect = 3e-17
Identities = 86/100 (86%)
Strand = Plus / Minus
Query: 17 tccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctagata 76
||||||| |||||| ||||| ||| ||| |||||||||||||||||||| |||||||||
Sbjct: 104 tccgtttggaattacttgtcgcagaaatgaatgtatctagatgtattttagttctagata 45
Query: 77 catccatttctgcgacgagtaatttagaacggagggagta 116
||||||| || | ||| ||||||| ||| ||||||||||
Sbjct: 44 catccatatccgagacaagtaattccgaatggagggagta 5
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgcgacgagtaatt 100
||||||||||| |||||||||||| |||||||
Sbjct: 64 tctagatacattcatttctgcgacaagtaatt 95
>RF00906;MIR1122;EU399684.1/4485-4371 4550:Secale cereale (rye)
Length = 115
Score = 85.7 bits (43), Expect = 1e-16
Identities = 88/103 (85%)
Strand = Plus / Minus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctag 73
||||||||| |||||| ||||| ||| ||||||||||||||| |||||||| ||||||
Sbjct: 107 ccctccgttcggaattacttgtctcagaaatggatgtatctagacgtattttagttctag 48
Query: 74 atacatccatttctgcgacgagtaatttagaacggagggagta 116
||| |||||||| | ||| ||||||| ||||||||||||||
Sbjct: 47 atagatccattttcgagacaagtaattccgaacggagggagta 5
Score = 63.9 bits (32), Expect = 5e-10
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggagggagta 116
|||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct: 64 tctagatacatccatttctgagacaagtaattccgaacggagggagta 111
>RF00906;MIR1122;AF459085.1/1867-1743 4513:Hordeum vulgare
Length = 125
Score = 85.7 bits (43), Expect = 1e-16
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 25 gaattatttgtcacaggtatggatgtatctagatgtattttaattctagatacatccatt 84
||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 106 gaattatttgtcatagaaatggatgtatctagacgtattttagttctagatacatccatt 47
Query: 85 tct 87
|||
Sbjct: 46 tct 44
Score = 44.1 bits (22), Expect = 4e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggagggagtata 118
||||||||||||||||||| ||| | ||||| | ||||||||||||||
Sbjct: 74 tctagatacatccatttctatgacaaataattccggacggagggagtata 123
>RF00906;MIR1122;AY146587.2/110938-111052 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 115
Score = 83.8 bits (42), Expect = 5e-16
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttaattctagatacatccatttctgcgacgagtaattta 102
||||||||||||||| ||||||| |||||||||||||||||| || ||| |||||||
Sbjct: 78 atggatgtatctagacatattttagttctagatacatccatttttgagacaagtaattcg 19
Query: 103 gaacggagggagta 116
||||||||||||||
Sbjct: 18 gaacggagggagta 5
Score = 69.9 bits (35), Expect = 8e-12
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctag 73
||||||||| ||||||| ||||| || ||||||||||||||| || || |||||
Sbjct: 9 ccctccgttccgaattacttgtctcaaaaatggatgtatctagaactaaaatatgtctag 68
Query: 74 atacatccatttctgcgacgagtaatttagaacggagggagta 116
|||||||||||| | |||| ||||||| |||||||||||||||
Sbjct: 69 atacatccattttttcgacaagtaattcagaacggagggagta 111
>RF00906;MIR1122;EU282564.1/350-463 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 83.8 bits (42), Expect = 5e-16
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttaattctagatacatccatttctgcgacgagtaatt 100
|||||||||||||||||||||| | |||||||||||||||||||| |||| |||||||
Sbjct: 38 atggatgtatctagatgtatttcagttctagatacatccatttctacgacaagtaatt 95
>RF00906;MIR1122;EU282650.1/1397-1273 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 83.8 bits (42), Expect = 5e-16
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 32 ttgtcacaggtatggatgtatctagatgtattttaattctagatacatccattt 85
|||||| ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 27 ttgtcataggaatggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;AF474373.1/52258-52134 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 81.8 bits (41), Expect = 2e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 29 tatttgtcacaggtatggatgtatctagatgtattttaattctagatacatccattt 85
||||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||||
Sbjct: 24 tatttgtcataggaatggatgtatctagatgtattttagttctagatatatccattt 80
>RF00906;MIR1122;AY235466.1/780-656 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttaattctagatacatccattt 85
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttctagatacatccattt 80
>RF00906;MIR1122;AY235464.1/714-838 4565:Triticum aestivum (bread
wheat)
Length = 125
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttaattctagatacatccattt 85
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 88 atggatgtatctagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AF022725.1/11631-11507 4513:Hordeum vulgare
Length = 125
Score = 75.8 bits (38), Expect = 1e-13
Identities = 50/54 (92%)
Strand = Plus / Minus
Query: 32 ttgtcacaggtatggatgtatctagatgtattttaattctagatacatccattt 85
|||||| ||| ||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 99 ttgtcataggaatgtatgtatctagatgtattataattctagatacatccattt 46
>RF00906;MIR1122;CT009625.1/8885-8999 37682:Aegilops tauschii
Length = 115
Score = 75.8 bits (38), Expect = 1e-13
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacatccatttctgcgacgagtaatttagaac 106
|||||||||||||||||||| || ||||||||||||||| | ||| ||||||| ||||
Sbjct: 74 atgtatctagatgtattttagttatagatacatccatttttatgacaagtaattccgaac 15
Query: 107 ggagggagta 116
||||||||||
Sbjct: 14 ggagggagta 5
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggagggagta 116
||||||||||| ||||||| |||||||||||| |||| |||||||||
Sbjct: 64 tctagatacattcatttcttggacgagtaatttcgaacagagggagta 111
>RF00906;MIR1122;L41869.1/3010-3134 4513:Hordeum vulgare
Length = 125
Score = 73.8 bits (37), Expect = 5e-13
Identities = 43/45 (95%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttaattctagatacatccatttct 87
|||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 38 atggatgtatctagatgtattttagttatagatacatccatttct 82
>RF00906;MIR1122;AF325196.1/33744-33620 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 36/36 (100%)
Strand = Plus / Minus
Query: 50 tatctagatgtattttaattctagatacatccattt 85
||||||||||||||||||||||||||||||||||||
Sbjct: 81 tatctagatgtattttaattctagatacatccattt 46
>RF00906;MIR1122;AF548379.1/5968-6092 37682:Aegilops tauschii
Length = 125
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 26 aattatttgtcacaggtatggatgtatctagatgtattttaattctagatacatccattt 85
||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 21 aattatttgtcggagaaatggatgtatctagacgtattttagttctagatacatccattt 80
Score = 60.0 bits (30), Expect = 7e-09
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggagggagtata 118
||||||||||||||||||| |||| | |||||| | ||||||||||||||
Sbjct: 52 tctagatacatccatttctccgacaaataatttcggacggagggagtata 3
>RF00906;MIR1122;BT009606.1/1324-1200 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacatccattt 85
||||||||||||||||||||||| |||||||||||||||
Sbjct: 84 atgtatctagatgtattttaattgtagatacatccattt 46
Score = 56.0 bits (28), Expect = 1e-07
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggagggagta 116
||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct: 74 tctagatacattcatttcttggacgagtaattctgaacggagggagta 121
>RF00906;MIR1122;EU159422.1/10160-10283 37682:Aegilops tauschii
Length = 124
Score = 69.9 bits (35), Expect = 8e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttaattctagatacatccattt 85
||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 38 atggatgtatctagacgtattttacttctagatacatccattt 80
>RF00906;MIR1122;AY368673.1/196592-196716 4571:Triticum turgidum
Length = 125
Score = 67.9 bits (34), Expect = 3e-11
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 32 ttgtcacaggtatggatgtatctagatgtattttaattctagatacatccattt 85
|||||| ||| ||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct: 99 ttgtcagaggaatggatgtacctagacgtattttagttctagatacatccattt 46
>RF00906;MIR1122;AF532104.1/14817-14951 37682:Aegilops tauschii
Length = 135
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 46 gatgtatctagatgtattttaattctagatacat 79
||||||||||||||||||||||||||||||||||
Sbjct: 85 gatgtatctagatgtattttaattctagatacat 52
>RF00906;MIR1122;AM932682.1/94335-94221 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 63.9 bits (32), Expect = 5e-10
Identities = 80/96 (83%)
Strand = Plus / Plus
Query: 14 ccctccgtttcgaattatttgtcacaggtatggatgtatctagatgtattttaattctag 73
||||||||| |||||| ||||| || ||||||||||||||| | ||| | ||||||
Sbjct: 9 ccctccgttcggaattacttgtcgtagaaatggatgtatctagacatttttcagttctag 68
Query: 74 atacatccatttctgcgacgagtaatttagaacgga 109
|||||||||||| |||||| ||||||| |||||||
Sbjct: 69 atacatccatttatgcgacaagtaattcggaacgga 104
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggaggga 113
||||||||||||||||||| |||| ||||||| |||||||||||
Sbjct: 52 tctagatacatccatttctacgacaagtaattccgaacggaggga 8
>RF00906;MIR1122;CT009585.1/3980-4094 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttaattctagatacatccattt 85
|||||| ||||||||||||||||| ||||||| ||||||||||
Sbjct: 78 atggatatatctagatgtattttagttctagacacatccattt 36
>RF00906;MIR1122;AM932686.1/4713-4599 4565:Triticum aestivum
(bread wheat)
Length = 115
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttaattctagatacatccattt 85
||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct: 78 atggatgtatctagacgtattttagttctagatacatctattt 36
Score = 61.9 bits (31), Expect = 2e-09
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 69 tctagatacatccatttctgcgacgagtaatttagaacggagggagtatat 119
||||||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct: 64 tctagatacatccattttcgcgacaagtaattccgaacggagggagtatat 114
>RF00906;MIR1122;AY951945.1/36609-36485 4568:Triticum monococcum
Length = 125
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttaattctagatacatccattt 85
|||| ||||||||||||||||||| |||||||||||| |||||
Sbjct: 38 atgggtgtatctagatgtattttagttctagatacattcattt 80
>RF00906;MIR1122;DQ145552.1/668-803 4573:Aegilops speltoides
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtattttaattctagatacat 79
|||||||||||||||||||||| ||||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagatacat 52
>RF00906;MIR1122;AB298185.1/18759-18893 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtattttaattctagataca 78
|||||||||||||||||||||| |||||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctagataca 53
>RF00906;MIR1122;FJ225151.1/115-1 4565:Triticum aestivum (bread
wheat)
Length = 115
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacat 79
|||||||||||||||||||| ||||||||||||
Sbjct: 79 atgtatctagatgtattttagttctagatacat 47
>RF00906;MIR1122;AB238931.1/2749-2883 4568:Triticum monococcum
Length = 135
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 45 ggatgtatctagatgtattttaattctagatacatcc 81
|||||||||||||||||||||| ||||| ||||||||
Sbjct: 86 ggatgtatctagatgtattttagttctaaatacatcc 50
>RF00906;MIR1122;DJ023136.1/240-116 4513:Hordeum vulgare
Length = 125
Score = 58.0 bits (29), Expect = 3e-08
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttaattctagatacatccatttct 87
||||||||||||||||| |||||| ||||| |||||| |||||||
Sbjct: 88 atggatgtatctagatgcattttagttctaaatacattcatttct 44
>RF00906;MIR1122;AY951945.1/93583-93458 4568:Triticum monococcum
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 43 atggatgtatcta-gatgtattttaattctagatacatccattt 85
||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct: 89 atggatgtatcaaagatgtattttagttctagatacatccattt 46
>RF00906;MIR1122;DQ889708.1/343-221 4565:Triticum aestivum (bread
wheat)
Length = 123
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 69 tctagatacatccatttctgcgacgagtaatt 100
|||||||||||||||||||||||| |||||||
Sbjct: 60 tctagatacatccatttctgcgacaagtaatt 29
Score = 50.1 bits (25), Expect = 7e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 25 gaattatttgtcacaggtatggatgtatctagatgtattttaattctagatacatccatt 84
|||||| ||||| ||| ||||||||||||||| | ||||| |||||||||||| ||||
Sbjct: 28 gaattacttgtcgcagaaatggatgtatctagacgagttttagttctagatacattcatt 87
Query: 85 t 85
|
Sbjct: 88 t 88
>RF00906;MIR1122;DQ904440.1/75385-75530 52163:Triticum monococcum
subsp. aegilopoides
Length = 146
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtattttaattctagatacatc 80
|||||||||||||||||||||| ||||| |||||||
Sbjct: 61 ggatgtatctagatgtattttagttctacatacatc 96
>RF00906;MIR1122;EU812563.1/59152-59276 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 125
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacatccattt 85
|||||||||||| ||||||| |||||||||||| |||||
Sbjct: 84 atgtatctagatatattttagttctagatacattcattt 46
>RF00906;MIR1122;AY641411.1/11483-11599 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 117
Score = 52.0 bits (26), Expect = 2e-06
Identities = 42/46 (91%), Gaps = 1/46 (2%)
Strand = Plus / Minus
Query: 43 atggatgtatctagatgtattttaa-ttctagatacatccatttct 87
||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 80 atggatgtatctagacgcatttttagttctagatacatccatttct 35
>RF00906;MIR1122;DQ245819.1/394-508 4577:Zea mays
Length = 115
Score = 50.1 bits (25), Expect = 7e-06
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 50 tatctagatgtattttaattctagatacatccatttc 86
||||||||||||||||| ||||| |||| ||||||||
Sbjct: 71 tatctagatgtattttagttctaaatacgtccatttc 35
>RF00906;MIR1122;EF028786.1/1091-968 4565:Triticum aestivum (bread
wheat)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 46 gatgtatctagatgtattttaattctagatacatccattt 85
|||||||||||| |||||||| ||||| |||||| |||||
Sbjct: 41 gatgtatctagacgtattttagttctaaatacattcattt 80
>RF00906;MIR1122;AY533103.1/332-199 4565:Triticum aestivum (bread
wheat)
Length = 134
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtattttaattctagata 76
|||||||| ||||||||||||| |||||||||
Sbjct: 49 ggatgtatttagatgtattttagttctagata 80
>RF00906;MIR1122;AY963808.1/10854-10720 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 45 ggatgtatctagatgtattttaattctagatacatc 80
||||||||||||| ||||||| |||||||||||||
Sbjct: 50 ggatgtatctagacatattttagttctagatacatc 85
>RF00906;MIR1122;DQ445241.1/4641-4518 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 46 gatgtatctagatgtattttaattctagatacatccattt 85
|||||||||||| ||||||| || |||||||||||||||
Sbjct: 41 gatgtatctagacttattttacttatagatacatccattt 80
>RF00906;MIR1122;AB095006.1/1949-2072 4565:Triticum aestivum
(bread wheat)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacatccattt 85
|||||| |||| |||||||| ||||| ||||||||||||
Sbjct: 84 atgtatttagacgtattttagttctacatacatccattt 46
>RF00906;MIR1122;DQ355219.1/57-171 4588:Lophopyrum elongatum
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacatccattt 85
||||||||||| |||||| | | ||||||||||||||||
Sbjct: 74 atgtatctagacgtatttcagtgctagatacatccattt 36
>RF00906;MIR1122;AF521177.1/27342-27466 4513:Hordeum vulgare
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 47 atgtatctagatgtattttaattctagatac 77
|||||||||||| |||||||||| |||||||
Sbjct: 42 atgtatctagatttattttaattatagatac 72
>RF00906;MIR1122;DQ537335.1/11354-11447 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 90 gacgagtaatttagaacggagggagtatat 119
|||||||||||| ||| |||||||||||||
Sbjct: 64 gacgagtaatttggaagggagggagtatat 93
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 91 acgagtaatttagaacggagggagta 116
||||||||||| ||||||||||||||
Sbjct: 30 acgagtaatttggaacggagggagta 5
>RF00906;MIR1122;AY663392.1/94965-94831 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacatc 80
|||||| ||||||||||||| |||||| ||||||
Sbjct: 84 atgtatatagatgtattttagttctaggtacatc 51
>RF00906;MIR1122;AY951945.1/37511-37377 4568:Triticum monococcum
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacatc 80
|||||||||||| ||||||| |||||| ||||||
Sbjct: 84 atgtatctagatatattttagttctaggtacatc 51
>RF00906;MIR1122;AY853252.1/156228-156351 4513:Hordeum vulgare
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 43 atggatgtatctagatgtattttaattctagatacatccatt 84
||||||| ||||||| ||||||| || ||||||||||||||
Sbjct: 38 atggatgaatctagacttattttagttatagatacatccatt 79
>RF00906;MIR1122;AF521177.1/9890-9767 4513:Hordeum vulgare
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 47 atgtatctagatgtattttaattctagatacatccatt 84
||||||||||| |||| ||||| ||||||||||||||
Sbjct: 83 atgtatctagacttattctaattgtagatacatccatt 46
