miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54753_tae-miR2033b:pmrd
Length = 72
Score = 143 bits (72), Expect = 3e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 22 tactccctccataaagaaatataagagcgtatagtgatctaaacactcttatatttcttt 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tactccctccataaagaaatataagagcgtatagtgatctaaacactcttatatttcttt 60
Query: 82 acagaaggagta 93
||||||||||||
Sbjct: 61 acagaaggagta 72
>48304_ave-miR1120:pmrd
Length = 85
Score = 77.8 bits (39), Expect = 2e-15
Identities = 70/81 (86%), Gaps = 7/81 (8%)
Strand = Plus / Minus
Query: 21 atactccctccataaagaaatataagagcgt-------atagtgatctaaacactcttat 73
|||||||||| ||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 83 atactccctctgtaaagaaatataagagcgtttagatcatagtgatctaaacgctcttat 24
Query: 74 atttctttacagaaggagtac 94
||||||||||||| |||||||
Sbjct: 23 atttctttacagagggagtac 3
Score = 65.9 bits (33), Expect = 6e-12
Identities = 67/79 (84%), Gaps = 7/79 (8%)
Strand = Plus / Plus
Query: 22 tactccctccataaagaaatataagagcgtatag-------tgatctaaacactcttata 74
||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct: 4 tactccctctgtaaagaaatataagagcgtttagatcactatgatctaaacgctcttata 63
Query: 75 tttctttacagaaggagta 93
|||||||||||| ||||||
Sbjct: 64 tttctttacagagggagta 82
>54696_tae-miR1121:pmrd
Length = 98
Score = 65.9 bits (33), Expect = 6e-12
Identities = 39/41 (95%)
Strand = Plus / Minus
Query: 54 agtgatctaaacactcttatatttctttacagaaggagtac 94
||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 48 agtgatctaaacactctaatatttctttacagagggagtac 8
Score = 60.0 bits (30), Expect = 4e-10
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 53 tagtgatctaaacactcttatatttctttacagaaggagtac 94
||||||||||||| ||||||||||||||||| || |||||||
Sbjct: 53 tagtgatctaaacgctcttatatttctttacggagggagtac 94
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 22 tactccctccataaagaaatataagagcgt 51
|||||||||| |||||||||||||||||||
Sbjct: 93 tactccctccgtaaagaaatataagagcgt 64
