miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagcat 30
|||||||||||||||||||||||||
Sbjct: 181 agggagctcccttcagtccaagcat 157
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 187 agggagctcccttcagtccaagca 164
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 173 agggagctcccttcagtccaagca 150
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 189 agggagctcccttcagtccaagca 166
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 180 agggagctcccttcagtccaagca 157
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 187 agggagctcccttcagtccaagca 164
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 182 agggagctcccttcagtccaagca 159
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaagca 29
||||||||||||||||||||||||
Sbjct: 172 agggagctcccttcagtccaagca 149
>RF00638;MIR159;ABIM01013664.1/2939-3169 3649:Carica papaya (papaya)
Length = 231
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaag 27
|||||||||||||||||||||||
Sbjct: 221 gagggagctcccttcagtccaag 199
>RF00638;MIR159;AASG02014601.1/2536-2726 3988:Ricinus communis
(castor bean)
Length = 191
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaag 27
|||||||||||||||||||||||
Sbjct: 181 gagggagctcccttcagtccaag 159
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaagca 29
||||||||||||||||||||||
Sbjct: 179 ggagctcccttcagtccaagca 158
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaa 26
||||||||||||||||||||||
Sbjct: 182 gagggagctcccttcagtccaa 161
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaa 26
||||||||||||||||||||||
Sbjct: 182 gagggagctcccttcagtccaa 161
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 5 gagggagctcccttcagtccaa 26
||||||||||||||||||||||
Sbjct: 182 gagggagctcccttcagtccaa 161
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 44.1 bits (22), Expect = 8e-04
Identities = 47/54 (87%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 140 tgaatgagtcggcagctcgttcaatccccgctacctcccatgagtggactgaag 193
||||||||||||||||| || ||||| ||||| ||||||||||||||||||
Sbjct: 71 tgaatgagtcggcagctaattaaatccta-ctaccacccatgagtggactgaag 19
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 179 agggagctcccttcagtccaag 158
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaagca 29
||||||||||||||||||||||
Sbjct: 193 ggagctcccttcagtccaagca 172
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaagca 29
||||||||||||||||||||||
Sbjct: 191 ggagctcccttcagtccaagca 170
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 8 ggagctcccttcagtccaagca 29
||||||||||||||||||||||
Sbjct: 190 ggagctcccttcagtccaagca 169
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 212 agggagctcccttcagtccaag 191
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 183 agggagctcccttcagtccaag 162
>RF00638;MIR159;CAAP02000776.1/6894-7088 29760:Vitis vinifera
Length = 195
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 6 agggagctcccttcagtccaag 27
||||||||||||||||||||||
Sbjct: 184 agggagctcccttcagtccaag 163
