miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54710_tae-miR1135:pmrd
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Minus
Query: 8 ctactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagt 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagt 50
Query: 68 tctagatacatccatatccgagacaagtaattccgaatggagggagtag 116
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 tctagatacatccatatccgagacaagtaattccgaatggagggagtag 1
Score = 81.8 bits (41), Expect = 1e-16
Identities = 92/109 (84%)
Strand = Plus / Plus
Query: 8 ctactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagt 67
||||||||||| |||||||||||||||| | || || |||||||||||| || ||
Sbjct: 1 ctactccctccattcggaattacttgtctcggatatggatgtatctagaactaaaatacg 60
Query: 68 tctagatacatccatatccgagacaagtaattccgaatggagggagtag 116
|||||||||||| || || | |||||||||||||||| |||||||||||
Sbjct: 61 tctagatacatctatttctgcgacaagtaattccgaacggagggagtag 109
>46909_ata-miR1122:pmrd
Length = 170
Score = 107 bits (54), Expect = 2e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagtt 68
|||||||||||| || ||||| |||||| |||||| ||||||||||||||||||||||||
Sbjct: 26 tactccctccgtccgaaattatttgtcggagaaatggatgtatctagacgtattttagtt 85
Query: 69 ctagatacatccat 82
||||||||||||||
Sbjct: 86 ctagatacatccat 99
Score = 46.1 bits (23), Expect = 6e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaat 43
|||||||||||| ||||| ||||||| ||||||||
Sbjct: 142 tactccctccgtccggaactacttgttgcagaaat 108
>54711_tae-miR1136:pmrd
Length = 107
Score = 101 bits (51), Expect = 1e-22
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagtt 68
|||||||||||||| |||||||||||||||| || |||||||||||| |||||||||||
Sbjct: 1 tactccctccgttccgaattacttgtcgcaggtatggatgtatctagatgtattttagtt 60
Query: 69 ctagatacatccatatccgagacaagtaatt 99
||| |||||||||| || | ||| |||||||
Sbjct: 61 ctaaatacatccatttctgcgacgagtaatt 91
Score = 69.9 bits (35), Expect = 4e-13
Identities = 89/107 (83%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttagtt 68
||||||||||||| ||||||| ||||||||||| ||||||| |||| || || |
Sbjct: 107 tactccctccgtttcaaattactcgtcgcagaaatggatgtatttagaactaaaatacat 48
Query: 69 ctagatacatccatatccgagacaagtaattccgaatggagggagta 115
||||||||||||||| | | |||||||||||| ||| ||||||||||
Sbjct: 47 ctagatacatccatacctgcgacaagtaattcggaacggagggagta 1
>54702_tae-miR1127:pmrd
Length = 150
Score = 79.8 bits (40), Expect = 4e-16
Identities = 67/76 (88%)
Strand = Plus / Plus
Query: 7 actactccctccgttcggaattacttgtcgcagaaatagatgtatctagacgtattttag 66
|||||||| |||||||||||||||| ||| ||||||| ||||||||| | | |||||||
Sbjct: 17 actactccttccgttcggaattactcgtccaagaaataaatgtatctaaatgcattttag 76
Query: 67 ttctagatacatccat 82
|| |||||||||||||
Sbjct: 77 ttgtagatacatccat 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 9 tactccctccgttcggaattacttgtc 35
|||||||||||||||||||||||||||
Sbjct: 134 tactccctccgttcggaattacttgtc 108
>54703_tae-miR1128:pmrd
Length = 188
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Minus
Query: 45 gatgtatctagacgtattttagttctagatacatcc 80
|||||||||||| |||||||||||||||||||||||
Sbjct: 114 gatgtatctagatgtattttagttctagatacatcc 79
>48322_bdi-miR1135:pmrd
Length = 138
Score = 48.1 bits (24), Expect = 2e-06
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 10 actccctccgttcggaattacttgtcgcagaaatagatgtatctagac 57
|||||||||| |||||||||||||||| | | || ||||||||||||
Sbjct: 130 actccctccggtcggaattacttgtcgaaatattacatgtatctagac 83
