miRNEST 2.0, an integrative microRNA resource :: BLAST
>41301_ptc-MIR159c:mirbase
Length = 183
Score = 69.9 bits (35), Expect = 7e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
||||||||||||||||||||| ||||| | |||| ||||| || |||||||||| |||||
Sbjct: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
Query: 70 gattccacagtccta 84
|| ||||||||||||
Sbjct: 70 ga-tccacagtccta 83
Score = 46.1 bits (23), Expect = 1e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 104 ggataggcttgcggcttgcatatgttaggagcttt 138
||||||| ||||||||||||||| | |||||||||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagcttt 131
>41299_ptc-MIR159a:mirbase
Length = 183
Score = 69.9 bits (35), Expect = 7e-13
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
||||||||||||||||||||| ||||| | |||| ||||| || |||||||||| |||||
Sbjct: 10 gtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69
Query: 70 gattccacagtccta 84
|| ||||||||||||
Sbjct: 70 ga-tccacagtccta 83
>41218_csi-MIR159:mirbase
Length = 216
Score = 63.9 bits (32), Expect = 4e-11
Identities = 67/76 (88%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgc-agggtaaatcaagctgctaatctat 68
||||||||||||||||||||||||||| | | || ||||||||| ||||||| | ||||
Sbjct: 11 gtggagctccttgaagtccaaaagaggttctagcaagggtaaattgagctgctgagctat 70
Query: 69 ggattccacagtccta 84
|||| |||||||||||
Sbjct: 71 ggatcccacagtccta 86
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 157 ctttctttggattgaagggagctctac 183
|||| ||||||||||||||||||||||
Sbjct: 181 ctttttttggattgaagggagctctac 207
>41528_sly-MIR159:mirbase
Length = 177
Score = 61.9 bits (31), Expect = 2e-10
Identities = 59/66 (89%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 119 ttgcatatgttaggagcttt--tttacctctttgttttatctttctttggattgaaggga 176
|||||||||| ||||||||| |||||| |||||||| ||| || |||||||||||||||
Sbjct: 113 ttgcatatgtcaggagctttattttacc-ctttgtttgatcattttttggattgaaggga 171
Query: 177 gctcta 182
||||||
Sbjct: 172 gctcta 177
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 tggagctccttgaagtccaa 31
||||||||||||||||||||
Sbjct: 1 tggagctccttgaagtccaa 20
>40657_mtr-MIR159a:mirbase
Length = 183
Score = 61.9 bits (31), Expect = 2e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 150 gttttatctttctttggattgaagggagctctaca 184
|||| ||||||||||||||||||||||||||||||
Sbjct: 140 gtttaatctttctttggattgaagggagctctaca 174
>41300_ptc-MIR159b:mirbase
Length = 187
Score = 60.0 bits (30), Expect = 6e-10
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 113 tgcggcttgcatatgttaggagcttttttacctctttgttttatctttctttggattgaa 172
|||||||||||||| | ||||||||| |||||| | ||| |||||| |||||||||||
Sbjct: 110 tgcggcttgcatatctcaggagctttattacctaat-gttagatctttttttggattgaa 168
Query: 173 gggagctcta 182
||||||||||
Sbjct: 169 gggagctcta 178
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaa 31
|||||||||||||||||||||
Sbjct: 10 gtggagctccttgaagtccaa 30
>40338_rco-MIR159:mirbase
Length = 180
Score = 58.0 bits (29), Expect = 3e-09
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 104 ggataggcttgcggcttgcatatgttaggagcttttttacctctttgttttatctttctt 163
||||||||||| ||||||||||| | |||||||| |||||| | | || ||| || ||
Sbjct: 98 ggataggcttgtggcttgcatatctcaggagcttcattacct-tgtattagatccttgtt 156
Query: 164 tggattgaagggagctctaca 184
|||||||||||||||||||||
Sbjct: 157 tggattgaagggagctctaca 177
Score = 54.0 bits (27), Expect = 4e-08
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
||||||||||||||||||||| ||||||| ||| ||||| || ||||||| | |||||
Sbjct: 3 gtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatg 62
Query: 70 gattccacagtccta 84
||| |||||| ||||
Sbjct: 63 gatcccacagcccta 77
>40432_gma-MIR159a:mirbase
Length = 214
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctctacac 185
|||||||||||||||||||||||||||
Sbjct: 172 ttctttggattgaagggagctctacac 198
Score = 46.1 bits (23), Expect = 1e-05
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
||||||||||||||||||||| |||||| || | |||| ||| ||||||| | |||||
Sbjct: 20 gtggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatg 79
Query: 70 gattccacagt 80
||| |||||||
Sbjct: 80 gatcccacagt 90
>40397_ahy-MIR159:mirbase
Length = 197
Score = 54.0 bits (27), Expect = 4e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagaggat-ttgcagggtaaatcaagctgctaatctatg 69
||||||||||||||||||||| ||||| | ||| ||||| || ||||||||| |||||
Sbjct: 2 gtggagctccttgaagtccaacagagggtcttggtgggtagattgagctgctaagctatg 61
Query: 70 gattccacagt 80
||| |||||||
Sbjct: 62 gatcccacagt 72
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctaca 184
|||||||||||||||||||||||
Sbjct: 157 tttggattgaagggagctctaca 179
>40311_bra-MIR159a:mirbase
Length = 185
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctctaca 184
||||||||||||||||||||||||||
Sbjct: 160 ttctttggattgaagggagctctaca 185
>40261_bna-MIR159:mirbase
Length = 183
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctctaca 184
||||||||||||||||||||||||||
Sbjct: 158 ttctttggattgaagggagctctaca 183
>39804_aly-MIR159a:mirbase
Length = 222
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctctaca 184
||||||||||||||||||||||||||
Sbjct: 180 ttctttggattgaagggagctctaca 205
>41024_pvu-MIR159a:mirbase
Length = 174
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctctac 183
|||||||||||||||||||||||||
Sbjct: 150 ttctttggattgaagggagctctac 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaa 31
|||||||||||||||||||||
Sbjct: 1 gtggagctccttgaagtccaa 21
>41023_pvu-MIR159a:mirbase
Length = 174
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctctac 183
|||||||||||||||||||||||||
Sbjct: 150 ttctttggattgaagggagctctac 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaa 31
|||||||||||||||||||||
Sbjct: 1 gtggagctccttgaagtccaa 21
>40016_ath-MIR159a:mirbase
Length = 184
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctctac 183
|||||||||||||||||||||||||
Sbjct: 160 ttctttggattgaagggagctctac 184
>41572_vvi-MIR159c:mirbase
Length = 190
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctacac 185
||||||||||||||||||||||||
Sbjct: 160 tttggattgaagggagctctacac 183
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaagagg 37
||||||||||||||||||||| |||||
Sbjct: 8 gtggagctccttgaagtccaatagagg 34
Score = 42.1 bits (21), Expect = 2e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 104 ggataggcttgcggcttgcatatgttaggagct 136
||||||||||| ||||||||||| | |||||||
Sbjct: 103 ggataggcttgtggcttgcatatctcaggagct 135
>41922_osa-MIR159f:mirbase
Length = 188
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 ttggattgaagggagctctacac 185
|||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacac 181
>40017_ath-MIR159b:mirbase
Length = 196
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctct 181
|||||||||||||||||||||||
Sbjct: 165 ttctttggattgaagggagctct 187
>39805_aly-MIR159b:mirbase
Length = 202
Score = 46.1 bits (23), Expect = 1e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 159 ttctttggattgaagggagctct 181
|||||||||||||||||||||||
Sbjct: 166 ttctttggattgaagggagctct 188
Score = 42.1 bits (21), Expect = 2e-04
Identities = 53/61 (86%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaaaagaggattt-gcagggtaaa-tcaagctgctaatctatgga 71
|||||||||||||| ||| |||| ||| |||||||||| | |||||||||| |||||||
Sbjct: 17 gagctccttgaagttcaatggagggtttagcagggtaaagtaaagctgctaagctatgga 76
Query: 72 t 72
|
Sbjct: 77 t 77
>42695_zma-MIR159f:mirbase
Length = 215
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 192 tctttggattgaagggagctct 213
>42690_zma-MIR159a:mirbase
Length = 246
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 205 tctttggattgaagggagctct 226
>42635_tae-MIR159b:mirbase
Length = 255
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 228 tctttggattgaagggagctct 249
>42494_sbi-MIR159:mirbase
Length = 226
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 202 tctttggattgaagggagctct 223
>42468_ssp-MIR159a:mirbase
Length = 261
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 221 tctttggattgaagggagctct 242
>42455_sof-MIR159d:mirbase
Length = 265
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 224 tctttggattgaagggagctct 245
>42453_sof-MIR159b:mirbase
Length = 266
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 tctttggattgaagggagctct 181
||||||||||||||||||||||
Sbjct: 225 tctttggattgaagggagctct 246
