miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU660899.1/111846-111744 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 103
Score = 85.7 bits (43), Expect = 8e-17
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 24 tttcaaatttgaactaaaaccacgacnagtaatttggaacggagggagta 73
|||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 54 tttcaaatttgaactaaaaccacgacaagtattttggaacggagggagta 5
Score = 48.1 bits (24), Expect = 2e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 31 tttgaactaaaaccacgacnagtaatttggaacggagggagta 73
|||||||||||| |||||| |||| ||||||| | ||||||||
Sbjct: 57 tttgaactaaaaacacgacaagtattttggaatgaagggagta 99
>RF00906;MIR1122;FJ184989.1/974-892 4565:Triticum aestivum (bread
wheat)
Length = 83
Score = 81.8 bits (41), Expect = 1e-15
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 22 cgtttcaaatttgaactaaaaccacgacnagtaatttggaacggagggagta 73
|||| ||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 28 cgttccaaatttgaactaaaaccacgacgagtaatttggaatggagggagta 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 51 agtaatttggaacggagggagtagtat 77
|||||||||||||||||||||||||||
Sbjct: 27 agtaatttggaacggagggagtagtat 1
>RF00906;MIR1122;DQ537335.1/11354-11447 4565:Triticum aestivum
(bread wheat)
Length = 94
Score = 75.8 bits (38), Expect = 8e-14
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 25 ttcaaatttgaactaaaaccacgacnagtaatttggaacggagggagta 73
||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct: 42 ttcaaatttgaactaaaaccatgacgagtaatttggaagggagggagta 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 25 ttcaaatttgaactaaaaccacgacnagtaattt 58
||||||||||||||||||||| || ||||||||
Sbjct: 53 ttcaaatttgaactaaaaccataacgagtaattt 20
>RF00906;MIR1122;AM932683.1/22409-22315 4565:Triticum aestivum
(bread wheat)
Length = 95
Score = 60.0 bits (30), Expect = 5e-09
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 25 ttcaaatttgaactaaaaccacgacnagtaatttggaacggagggagta 73
|||||||||||||||||||||| || ||||| | ||||| |||||||||
Sbjct: 53 ttcaaatttgaactaaaaccacaacgagtaaataggaacagagggagta 5
Score = 50.1 bits (25), Expect = 4e-06
Identities = 46/52 (88%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 25 ttcaaatttgaactaaaacca-cgacnagtaatttggaacggagggagtagt 75
||||||||||||||||||||| | || | ||| | |||||||||||||||||
Sbjct: 42 ttcaaatttgaactaaaaccaccaacgactaaatcggaacggagggagtagt 93
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 56.0 bits (28), Expect = 7e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 27 caaatttgaactaaaaccacgacnagtaatttggaacggagggagta 73
|||| ||| |||||||||||||| |||| || |||||||||||||||
Sbjct: 44 caaagttgtactaaaaccacgacaagtatttaggaacggagggagta 90
>RF00906;MIR1122;AB298184.1/15044-14931 4565:Triticum aestivum
(bread wheat)
Length = 114
Score = 52.0 bits (26), Expect = 1e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 46 cgacnagtaatttggaacggagggagtag 74
|||| ||||||||||||||||||||||||
Sbjct: 83 cgacgagtaatttggaacggagggagtag 111
>RF00906;MIR1122;AK252407.1/1225-1338 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 114
Score = 52.0 bits (26), Expect = 1e-06
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 25 ttcaaatttgaactaaaaccacgacnagtaatttggaacggagggagta 73
||||||||||||||||||||||||| || | | |||| ||| |||||||
Sbjct: 62 ttcaaatttgaactaaaaccacgacaagaattatggaccggggggagta 110
>RF00906;MIR1122;EF540321.1/236564-236678 4571:Triticum turgidum
Length = 115
Score = 50.1 bits (25), Expect = 4e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 46 cgacnagtaatttggaacggagggagta 73
|||| |||||||||||||||||||||||
Sbjct: 84 cgacgagtaatttggaacggagggagta 111
>RF00906;MIR1122;AF459639.1/191055-190921 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 4e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 gacnagtaatttggaacggagggagtag 74
||| ||||||||||||||||||||||||
Sbjct: 105 gacaagtaatttggaacggagggagtag 132
>RF00906;MIR1122;DQ123819.1/2832-2966 4571:Triticum turgidum
Length = 135
Score = 50.1 bits (25), Expect = 4e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 gacnagtaatttggaacggagggagtag 74
||| ||||||||||||||||||||||||
Sbjct: 105 gacaagtaatttggaacggagggagtag 132
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 taatttggaacggagggagtagta 76
||||||||||||||||||||||||
Sbjct: 85 taatttggaacggagggagtagta 108
>RF00906;MIR1122;AY137517.1/5819-5912 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 27 caaatttgaactaaaaccacgacnagtaatttggaacggagggagta 73
||||||||||||||||||| ||| || |||||| |||||||||||
Sbjct: 44 caaatttgaactaaaaccatgacacttattttggatcggagggagta 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 25 ttcaaatttgaactaaaaccacgacnagtaatttggaacggaggga 70
|||||||||| |||||||||||||| || |||||| ||||||||
Sbjct: 53 ttcaaatttgtactaaaaccacgacacttattttggatcggaggga 8
>RF00906;MIR1122;AM180263.1/1164-1082 4513:Hordeum vulgare
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 35 aactaaaaccacgacnagtaatttggaacggagggagta 73
||||||||||||||| || | | ||||||||||||||||
Sbjct: 43 aactaaaaccacgacaagaattatggaacggagggagta 5
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 48.1 bits (24), Expect = 2e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 31 tttgaactaaaaccacgacnagtaatttggaacggagggagta 73
|||| |||||||| ||||| |||| || |||||||||||||||
Sbjct: 47 tttgcactaaaacaacgacaagtatttaggaacggagggagta 5
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 agtaatttggaacggagggagta 73
|||||||||||||||||||||||
Sbjct: 110 agtaatttggaacggagggagta 132
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 53 taatttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 25 taatttggaacggagggagtag 4
>RF00906;MIR1122;ABXC01002968.1/30248-30403 4558:Sorghum bicolor
(sorghum)
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 53 taatttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 25 taatttggaacggagggagtag 4
>RF00906;MIR1122;ABXC01000646.1/88636-88479 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 taatttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 134 taatttggaacggagggagtag 155
>RF00906;MIR1122;ABXC01004300.1/32074-32218 4558:Sorghum bicolor
(sorghum)
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 54 aatttggaacggagggagtagt 75
||||||||||||||||||||||
Sbjct: 24 aatttggaacggagggagtagt 3
>RF00906;MIR1122;ABXC01002366.1/89795-89952 4558:Sorghum bicolor
(sorghum)
Length = 158
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 taatttggaacggagggagtag 74
||||||||||||||||||||||
Sbjct: 134 taatttggaacggagggagtag 155
>RF00906;MIR1122;EU117148.1/1866-1980 4571:Triticum turgidum
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 47 gacnagtaatttggaacggagggag 71
||| |||||||||||||||||||||
Sbjct: 85 gacgagtaatttggaacggagggag 109
>RF00906;MIR1122;AAAA02003905.1/26512-26644 39946:Oryza sativa
Indica Group
Length = 133
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 56 tttggaacggagggagtagtat 77
||||||||||||||||||||||
Sbjct: 22 tttggaacggagggagtagtat 1
