miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;EU545231.1/2974-3138 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 165
Score = 133 bits (67), Expect = 1e-30
Identities = 145/168 (86%), Gaps = 6/168 (3%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacgg 83
|||||||||||||||||||||| |||||| || ||||||| | ||| ||||||||||
Sbjct: 1 tactccctccgttcctaaatataagtcttttaagcgatttcactagatgtctacatacgg 60
Query: 84 agcaaaatgagtgaatctacactctaaaacatgtctatatacatccatatgcggtagtcc 143
|||||||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||
Sbjct: 61 agcaaaatgattgaatgtacactctaaagtatgtctatatacatccgtat---gtagtcc 117
Query: 144 att--tgaaatct-taaaaagacaaatatttaggaacggagggagtag 188
||| |||||||| || |||||| |||||||||||||||||||||||
Sbjct: 118 attagtgaaatctctacaaagacttatatttaggaacggagggagtag 165
Score = 67.9 bits (34), Expect = 5e-11
Identities = 55/62 (88%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacg 82
||||||||||||||||||||||| |||||| ||||||||||| || |||||||||||
Sbjct: 165 ctactccctccgttcctaaatataagtctttgtagagatttcactaatggactacatacg 106
Query: 83 ga 84
||
Sbjct: 105 ga 104
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 157 aaaagacaaatatttaggaacggagggagta 187
||||||| ||||||||||||||||||||||
Sbjct: 31 aaaagacttatatttaggaacggagggagta 1
>RF00906;MIR1122;AF521177.1/76812-76977 4513:Hordeum vulgare
Length = 166
Score = 127 bits (64), Expect = 7e-29
Identities = 97/108 (89%)
Strand = Plus / Minus
Query: 22 tctactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatac 81
|||||||||||||||||||||||| |||||| |||||||||| | | ||||||||||
Sbjct: 166 tctactccctccgttcctaaatataagtctttttagagatttcgctagacgactacatac 107
Query: 82 ggagcaaaatgagtgaatctacactctaaaacatgtctatatacatcc 129
||||||||||||||||||||| | ||||||| ||||||||||||||||
Sbjct: 106 ggagcaaaatgagtgaatctatattctaaaatatgtctatatacatcc 59
Score = 54.0 bits (27), Expect = 8e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 155 taaaaagacaaatatttaggaacggagggagtaga 189
||||||||| ||||||||||||||||||||||||
Sbjct: 132 taaaaagacttatatttaggaacggagggagtaga 166
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttca 65
|||||||||||||||||||||| |||||| ||||| |||||
Sbjct: 1 tactccctccgttcctaaatataagtctttttagaggtttca 42
>RF00906;MIR1122;AY821693.1/1381-1215 58935:Australopyrum velutinum
Length = 167
Score = 127 bits (64), Expect = 7e-29
Identities = 144/166 (86%), Gaps = 6/166 (3%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacgg 83
||||||||| |||||||||||| |||||| |||||||| || | ||||||||||||
Sbjct: 5 tactccctctgttcctaaatataagtctttttagagattctaatatg-gactacatacgg 63
Query: 84 agcaaaatgagtgaatctacactctaaaacatgtctatatacatccatatgcggtagtcc 143
||||||||||||||||||||||||||||| | |||||||| ||||| ||| |||||||
Sbjct: 64 agcaaaatgagtgaatctacactctaaaatacgtctatattcatccgtat---gtagtcc 120
Query: 144 at-ttgaaatct-taaaaagacaaatatttaggaacggagggagta 187
|| || |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 121 atattcaaatctctaaaaagacttatatttaggaacggagggagta 166
Score = 56.0 bits (28), Expect = 2e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtctttctagagattt 63
|||||||||||||||||||||| |||||| |||||||||
Sbjct: 166 tactccctccgttcctaaatataagtctttttagagattt 127
>RF00906;MIR1122;AF338431.1/8563-8727 37682:Aegilops tauschii
Length = 165
Score = 97.6 bits (49), Expect = 6e-20
Identities = 80/89 (89%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacgg 83
|||||||||||||||||||||| |||| | ||||||||||| | | |||||||||||
Sbjct: 161 tactccctccgttcctaaatataagtctctgtagagatttca-ctatggactacatacga 103
Query: 84 agcaaaatgagtgaatctacactctaaaa 112
|||||||||||||||||||||||||||||
Sbjct: 102 agcaaaatgagtgaatctacactctaaaa 74
Score = 54.0 bits (27), Expect = 8e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatt 62
|||||||||||||||||||||| |||||| ||||||||
Sbjct: 5 tactccctccgttcctaaatataagtctttgtagagatt 43
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 140 atatttaggaacggagggagta 161
>RF00906;MIR1122;AF427791.1/1754-1590 4513:Hordeum vulgare
Length = 165
Score = 93.7 bits (47), Expect = 9e-19
Identities = 59/63 (93%)
Strand = Plus / Minus
Query: 72 gactacatacggagcaaaatgagtgaatctacactctaaaacatgtctatatacatccat 131
||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
Sbjct: 115 gactacatacggagcaaaatgagtgaatctatactctaaaatatgtctatgtacatccgt 56
Query: 132 atg 134
|||
Sbjct: 55 atg 53
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 1 tactccctccgttcctaaatat 22
>RF00906;MIR1122;DQ352178.1/5805-5640 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 166
Score = 85.7 bits (43), Expect = 2e-16
Identities = 58/63 (92%)
Strand = Plus / Minus
Query: 72 gactacatacggagcaaaatgagtgaatctacactctaaaacatgtctatatacatccat 131
||||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||| |
Sbjct: 118 gactacatacggagcaaaatgagcgaatctatactctaaaatatgtctatgtacatccgt 59
Query: 132 atg 134
|||
Sbjct: 58 atg 56
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatat 45
|||||||||||||||||||||||
Sbjct: 3 ctactccctccgttcctaaatat 25
>RF00906;MIR1122;AK252971.1/1469-1351 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 83.8 bits (42), Expect = 9e-16
Identities = 70/78 (89%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacgg 83
|||||||||||||||||||||| |||||| |||||||| || | | ||||||||||||
Sbjct: 5 tactccctccgttcctaaatataagtctttttagagattaca-ctatggactacatacgg 63
Query: 84 agcaaaatgagtgaatct 101
||||||||||||||||||
Sbjct: 64 agcaaaatgagtgaatct 81
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 155 taaaaagacaaatatttaggaacggagggagta 187
||||||||| ||||||||||||||||||||||
Sbjct: 37 taaaaagacttatatttaggaacggagggagta 5
>RF00906;MIR1122;DQ871219.1/152084-152250 85692:Triticum turgidum
subsp. dicoccoides
Length = 167
Score = 77.8 bits (39), Expect = 6e-14
Identities = 73/83 (87%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacg 82
||||||||||||||||||||||| |||||| ||||||||| || | ||| |||||||
Sbjct: 4 ctactccctccgttcctaaatataagtctttggagagatttc-actatagaccacatacg 62
Query: 83 gagcaaaatgagtgaatctacac 105
||| |||||||||||||||||||
Sbjct: 63 gagaaaaatgagtgaatctacac 85
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 166 atatttaggaacggagggagtag 188
|||||||||||||||||||||||
Sbjct: 26 atatttaggaacggagggagtag 4
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 165 tactccctccgttcctaaatat 144
>RF00906;MIR1122;FJ548567.1/3141-3305 4513:Hordeum vulgare
Length = 165
Score = 77.8 bits (39), Expect = 6e-14
Identities = 94/111 (84%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacgg 83
|||||||||||||||||||| | |||||| |||||||||| || | ||||||| ||
Sbjct: 3 tactccctccgttcctaaatgtaagtctttttagagatttctctaaggggctacatatgg 62
Query: 84 agcaaaatgagtgaatctacactctaaaacatgtctatatacatccatatg 134
|||||||||||||||||| ||||| || |||||||||||||||| ||||
Sbjct: 63 agcaaaatgagtgaatctgtactct-aagtatgtctatatacatccgtatg 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtctttctaga 58
|||||||||||||||||||||| |||||| ||||
Sbjct: 165 tactccctccgttcctaaatataagtctttttaga 131
>RF00906;MIR1122;DQ537335.1/79725-79622 4565:Triticum aestivum
(bread wheat)
Length = 104
Score = 69.9 bits (35), Expect = 1e-11
Identities = 44/47 (93%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaacaaa 70
||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 100 tactccctccgttcctaaatacttgtctttctaggcatttcaacaaa 54
Score = 54.0 bits (27), Expect = 8e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaa 66
|||||||||| || |||||||||||||||||||| |||||||
Sbjct: 5 tactccctccatttttaaatatttgtctttctagacatttcaa 47
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 158 aaagacaaatatttaggaacggagggagta 187
|||||||| |||||||||||||||||||||
Sbjct: 71 aaagacaagtatttaggaacggagggagta 100
>RF00906;MIR1122;AY013246.1/66605-66771 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 167
Score = 63.9 bits (32), Expect = 8e-10
Identities = 93/112 (83%), Gaps = 1/112 (0%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacg 82
||||||||||||||||||||||| | | || || | |||||| | | |||||||||||
Sbjct: 164 ctactccctccgttcctaaatataagaccttttacaaatttcactata-gactacatacg 106
Query: 83 gagcaaaatgagtgaatctacactctaaaacatgtctatatacatccatatg 134
||||||||||||||||| |||| | |||| ||| ||| |||||||| ||||
Sbjct: 105 gagcaaaatgagtgaatttacatcccaaaatatgactacatacatccgtatg 54
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatat 45
|||||||||||||||||||||||
Sbjct: 1 ctactccctccgttcctaaatat 23
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 166 atatttaggaacggagggagtag 188
|||||||||||||||||||||||
Sbjct: 142 atatttaggaacggagggagtag 164
>RF00906;MIR1122;AJ400714.1/2947-2781 4565:Triticum aestivum (bread
wheat)
Length = 167
Score = 58.0 bits (29), Expect = 5e-08
Identities = 75/89 (84%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacgg 83
|||||||||||||||||||||| |||||| | |||||||| | ||| ||||||||
Sbjct: 2 tactccctccgttcctaaatataagtctttggacagatttcattatg-gaccacatacgg 60
Query: 84 agcaaaatgagtgaatctacactctaaaa 112
|| |||||||||||| ||| |||||||||
Sbjct: 61 agtaaaatgagtgaacctatactctaaaa 89
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttca 65
|||||||||| ||||||||||| |||||| |||||||||||
Sbjct: 163 tactccctccattcctaaatataagtctttgtagagatttca 122
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 23 atatttaggaacggagggagta 2
>RF00906;MIR1122;EU812563.1/51726-51572 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 155
Score = 56.0 bits (28), Expect = 2e-07
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacgg 83
|||||||||||||||||||||| |||||| ||| |||||| | | ||||||||||
Sbjct: 151 tactccctccgttcctaaatataagtcttttaagatatttcactagtagtctacatacgg 92
Query: 84 agcaaaatgagt 95
||||||||||||
Sbjct: 91 agcaaaatgagt 80
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 157 aaaagacaaatatttaggaacggagggagta 187
||||||| ||||||||||||||||||||||
Sbjct: 121 aaaagacttatatttaggaacggagggagta 151
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 26 atatttaggaacggagggagta 5
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatat 26
>RF00906;MIR1122;EU730896.1/84586-84679 15368:Brachypodium
distachyon
Length = 94
Score = 54.0 bits (27), Expect = 8e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 20 cttctactccctccgttcctaaatatttgtc 50
||||||||||||||||||||||||| |||||
Sbjct: 94 cttctactccctccgttcctaaatacttgtc 64
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 161 gacaaatatttaggaacggagggagtagaa 190
||||| ||||||||||||||||||||||||
Sbjct: 64 gacaagtatttaggaacggagggagtagaa 93
>RF00906;MIR1122;FM164415.1/16902-16796 4513:Hordeum vulgare
Length = 107
Score = 52.0 bits (26), Expect = 3e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtctttctagagatttca 65
|||||||||| ||||||||||| ||||||||| ||||||||
Sbjct: 5 tactccctcctttcctaaatataagtctttctaaagatttca 46
>RF01058;MIR806;AAAA02008217.1/23513-23265 39946:Oryza sativa Indica
Group
Length = 249
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttg 48
|||||||||||||||||||||||||
Sbjct: 248 tactccctccgttcctaaatatttg 224
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagta 187
|||||||||||||||||||||||||
Sbjct: 224 caaatatttaggaacggagggagta 248
>RF01058;MIR806;AP008208.1/25882787-25882549 39947:Oryza sativa
Japonica Group
Length = 239
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttg 48
|||||||||||||||||||||||||
Sbjct: 238 tactccctccgttcctaaatatttg 214
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagta 187
|||||||||||||||||||||||||
Sbjct: 214 caaatatttaggaacggagggagta 238
>RF01058;MIR806;AAAA02011684.1/6693-6933 39946:Oryza sativa Indica
Group
Length = 241
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagta 187
|||||||||||||||||||||||||
Sbjct: 26 caaatatttaggaacggagggagta 2
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttg 48
|||||||||||||||||||||||||
Sbjct: 2 tactccctccgttcctaaatatttg 26
>RF01058;MIR806;AACV01015094.1/17201-16961 39947:Oryza sativa
Japonica Group
Length = 241
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttg 48
|||||||||||||||||||||||||
Sbjct: 240 tactccctccgttcctaaatatttg 216
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagta 187
|||||||||||||||||||||||||
Sbjct: 216 caaatatttaggaacggagggagta 240
>RF01058;MIR806;AL606588.4/129622-129859 4530:Oryza sativa (rice)
Length = 238
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagta 187
|||||||||||||||||||||||||
Sbjct: 26 caaatatttaggaacggagggagta 2
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttg 48
|||||||||||||||||||||||||
Sbjct: 2 tactccctccgttcctaaatatttg 26
>RF01058;MIR806;AAAA02022644.1/912-689 39946:Oryza sativa Indica
Group
Length = 224
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 164 aaatatttaggaacggagggagta 187
||||||||||||||||||||||||
Sbjct: 25 aaatatttaggaacggagggagta 2
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatattt 47
||||||||||||||||||||||||
Sbjct: 2 tactccctccgttcctaaatattt 25
>RF01058;MIR806;AP003629.3/52570-52813 39947:Oryza sativa Japonica
Group
Length = 244
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 164 aaatatttaggaacggagggagta 187
||||||||||||||||||||||||
Sbjct: 25 aaatatttaggaacggagggagta 2
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatattt 47
||||||||||||||||||||||||
Sbjct: 2 tactccctccgttcctaaatattt 25
>RF01058;MIR806;AP008209.1/22697310-22697556 39947:Oryza sativa
Japonica Group
Length = 247
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 164 aaatatttaggaacggagggagta 187
||||||||||||||||||||||||
Sbjct: 25 aaatatttaggaacggagggagta 2
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatattt 47
||||||||||||||||||||||||
Sbjct: 2 tactccctccgttcctaaatattt 25
>RF00906;MIR1122;AY853252.1/232318-232152 4513:Hordeum vulgare
Length = 167
Score = 48.1 bits (24), Expect = 5e-05
Identities = 91/112 (81%), Gaps = 1/112 (0%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttgtctttctagagatttcaacaaatgactacatacg 82
||||||||||||||||||||||| | | || |||| | ||| || | |||||||||||
Sbjct: 4 ctactccctccgttcctaaatataagaccttttaga-aattctactatggactacatacg 62
Query: 83 gagcaaaatgagtgaatctacactctaaaacatgtctatatacatccatatg 134
|| ||||| | | || ||| || |||||| |||||||||||||||| ||||
Sbjct: 63 gaacaaaacaaataaacctataccctaaaatatgtctatatacatccgtatg 114
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 166 atatttaggaacggagggagtag 188
|||||||||||||||||||||||
Sbjct: 26 atatttaggaacggagggagtag 4
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 166 tactccctccgttcctaaatat 145
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 145 atatttaggaacggagggagta 166
>RF01058;MIR806;AAAA02029566.1/13003-12764 39946:Oryza sativa Indica
Group
Length = 240
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 164 aaatatttaggaacggagggagt 186
|||||||||||||||||||||||
Sbjct: 25 aaatatttaggaacggagggagt 3
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 25 actccctccgttcctaaatattt 47
|||||||||||||||||||||||
Sbjct: 3 actccctccgttcctaaatattt 25
>RF01058;MIR806;AAAA02001246.1/1874-2105 39946:Oryza sativa Indica
Group
Length = 232
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtc 50
|||||||||||| ||||||||||||||
Sbjct: 231 tactccctccgtccctaaatatttgtc 205
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 161 gacaaatatttaggaacggagggagta 187
|||||||||||||| ||||||||||||
Sbjct: 205 gacaaatatttagggacggagggagta 231
>RF01058;MIR806;AP008218.1/4987696-4987454 39947:Oryza sativa
Japonica Group
Length = 243
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 161 gacaaatatttaggaacggagggagta 187
||||||||||||| |||||||||||||
Sbjct: 28 gacaaatatttagaaacggagggagta 2
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtc 50
||||||||||||| |||||||||||||
Sbjct: 2 tactccctccgtttctaaatatttgtc 28
>RF00906;MIR1122;AK248896.1/138-279 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 142
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtctttc 54
|||||||||||||||||||||| |||||||
Sbjct: 138 tactccctccgttcctaaatataagtctttc 108
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 117 atatttaggaacggagggagta 138
>RF00906;MIR1122;EU730901.1/155966-155873 15368:Brachypodium
distachyon
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 161 gacaaatatttaggaacggagggagta 187
||||| |||||||||||||||||||||
Sbjct: 31 gacaagtatttaggaacggagggagta 5
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgtc 50
||||||||||||||||||||| |||||
Sbjct: 5 tactccctccgttcctaaatacttgtc 31
>RF00906;MIR1122;EU730899.1/47735-47828 15368:Brachypodium
distachyon
Length = 94
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatatttgtc 50
||||||||||||||||||||| |||||
Sbjct: 90 tactccctccgttcctaaatacttgtc 64
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 161 gacaaatatttaggaacggagggagta 187
||||| |||||||||||||||||||||
Sbjct: 64 gacaagtatttaggaacggagggagta 90
>RF00906;MIR1122;AACV01003934.1/29289-29133 39947:Oryza sativa
Japonica Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 166 atatttaggaacggagggagtag 188
|||||||||||||||||||||||
Sbjct: 26 atatttaggaacggagggagtag 4
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatat 45
|||||||||||||||||||||||
Sbjct: 4 ctactccctccgttcctaaatat 26
>RF01058;MIR806;AAAA02001528.1/33342-33103 39946:Oryza sativa Indica
Group
Length = 240
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 26 caaatatttagaaacggagggagtag 1
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 1 ctactccctccgtttctaaatatttg 26
>RF01058;MIR806;AP008210.1/13174748-13174507 39947:Oryza sativa
Japonica Group
Length = 242
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 242 ctactccctccgtttctaaatatttg 217
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 217 caaatatttagaaacggagggagtag 242
>RF01058;MIR806;AP006856.2/2894-3132 39947:Oryza sativa Japonica
Group
Length = 239
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 239 ctactccctccgtttctaaatatttg 214
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 214 caaatatttagaaacggagggagtag 239
>RF01058;MIR806;AAAA02029671.1/2843-3067 39946:Oryza sativa Indica
Group
Length = 225
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagtag 188
|||||||||||| |||||||||||||
Sbjct: 26 caaatatttagggacggagggagtag 1
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttg 48
||||||||||||| ||||||||||||
Sbjct: 1 ctactccctccgtccctaaatatttg 26
>RF01058;MIR806;BX255875.3/110133-110364 4530:Oryza sativa (rice)
Length = 232
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 26 caaatatttagaaacggagggagtag 1
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 1 ctactccctccgtttctaaatatttg 26
>RF01058;MIR806;AP004691.2/82989-82746 39947:Oryza sativa Japonica
Group
Length = 244
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||| |||||||||||||||
Sbjct: 244 ctactccctcagttcctaaatatttg 219
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||||||| ||||||||||
Sbjct: 219 caaatatttaggaactgagggagtag 244
>RF01058;MIR806;AACV01025401.1/24499-24738 39947:Oryza sativa
Japonica Group
Length = 240
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 240 ctactccctccgtttctaaatatttg 215
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 215 caaatatttagaaacggagggagtag 240
>RF01058;MIR806;AC136218.2/6294-6056 39947:Oryza sativa Japonica
Group
Length = 239
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
||||||||||| ||||||||||||||
Sbjct: 239 ctactccctcctttcctaaatatttg 214
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
|||||||||||||| |||||||||||
Sbjct: 214 caaatatttaggaaaggagggagtag 239
>RF01058;MIR806;AP008215.1/21100314-21100058 39947:Oryza sativa
Japonica Group
Length = 257
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 26 caaatatttagaaacggagggagtag 1
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 1 ctactccctccgtttctaaatatttg 26
>RF01058;MIR806;AP008214.1/20372442-20372205 39947:Oryza sativa
Japonica Group
Length = 238
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
||||||||||| ||||||||||||||
Sbjct: 238 ctactccctcctttcctaaatatttg 213
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
|||||||||||||| |||||||||||
Sbjct: 213 caaatatttaggaaaggagggagtag 238
>RF01058;MIR806;AACV01003462.1/3109-2870 39947:Oryza sativa Japonica
Group
Length = 240
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 26 caaatatttagaaacggagggagtag 1
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 1 ctactccctccgtttctaaatatttg 26
>RF01058;MIR806;CR855115.1/69132-69372 4530:Oryza sativa (rice)
Length = 241
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 26 caaatatttagaaacggagggagtag 1
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 1 ctactccctccgtttctaaatatttg 26
>RF01058;MIR806;AAAA02015256.1/6210-6451 39946:Oryza sativa Indica
Group
Length = 242
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
||||||||||||||||||||| ||||
Sbjct: 242 ctactccctccgttcctaaatgtttg 217
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
|||| |||||||||||||||||||||
Sbjct: 217 caaacatttaggaacggagggagtag 242
>RF01058;MIR806;AAAA02029319.1/3559-3800 39946:Oryza sativa Indica
Group
Length = 242
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 242 ctactccctccgtttctaaatatttg 217
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 217 caaatatttagaaacggagggagtag 242
>RF01058;MIR806;AACV01003404.1/46592-46354 39947:Oryza sativa
Japonica Group
Length = 239
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 163 caaatatttaggaacggagggagtag 188
|||||||||||| |||||||||||||
Sbjct: 26 caaatatttagggacggagggagtag 1
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 23 ctactccctccgttcctaaatatttg 48
||||||||||||| ||||||||||||
Sbjct: 1 ctactccctccgtccctaaatatttg 26
>RF01058;MIR806;AAAA02030120.1/47083-46895 39946:Oryza sativa Indica
Group
Length = 189
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 189 ctactccctccgtttctaaatatttg 164
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 164 caaatatttagaaacggagggagtag 189
>RF01058;MIR806;AP008211.1/4711397-4711161 39947:Oryza sativa
Japonica Group
Length = 237
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 23 ctactccctccgttcctaaatatttg 48
|||||||||||||| |||||||||||
Sbjct: 237 ctactccctccgtttctaaatatttg 212
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 163 caaatatttaggaacggagggagtag 188
||||||||||| ||||||||||||||
Sbjct: 212 caaatatttagaaacggagggagtag 237
>RF00906;MIR1122;FJ188379.1/3521-3613 4513:Hordeum vulgare
Length = 93
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 89 tactccctccgttcctaaatat 68
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 68 atatttaggaacggagggagta 89
>RF00906;MIR1122;AK248235.1/1048-956 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 93
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 162 acaaatatttaggaacggagggagta 187
|||||||||||||||| |||||||||
Sbjct: 30 acaaatatttaggaacagagggagta 5
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatatttgt 49
||||||||| ||||||||||||||||
Sbjct: 5 tactccctctgttcctaaatatttgt 30
>RF00906;MIR1122;AAAA02006463.1/56610-56765 39946:Oryza sativa
Indica Group
Length = 156
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 cttctactccctccgttcctaaatat 45
|||||||||||||||| |||||||||
Sbjct: 1 cttctactccctccgtccctaaatat 26
>RF00906;MIR1122;AC129718.2/26799-26917 39947:Oryza sativa Japonica
Group
Length = 119
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 26 atatttaggaacggagggagta 5
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatat 26
>RF00906;MIR1122;AP008207.1/21121800-21121682 39947:Oryza sativa
Japonica Group
Length = 119
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 115 tactccctccgttcctaaatat 94
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 94 atatttaggaacggagggagta 115
>RF00906;MIR1122;AP008214.1/20360044-20360123 39947:Oryza sativa
Japonica Group
Length = 80
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 76 tactccctccgttcctaaatat 55
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 55 atatttaggaacggagggagta 76
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 166 atatttaggaacggagggagta 187
||||||||||||||||||||||
Sbjct: 26 atatttaggaacggagggagta 5
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 tactccctccgttcctaaatat 45
||||||||||||||||||||||
Sbjct: 5 tactccctccgttcctaaatat 26
